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We present libvdwxc, a general library for evaluating the energy and potential for the family of vdW-DF exchange--correlation functionals. libvdwxc provides an efficient implementation of the vdW-DF method and can be interfaced with various…

Materials Science · Physics 2021-01-14 Ask Hjorth Larsen , Mikael Kuisma , Joakim Löfgren , Yann Pouillon , Paul Erhart , Per Hyldgaard

Generalized Benders decomposition (GBD) is a globally optimal algorithm for mixed integer nonlinear programming (MINLP) problems, which are NP-hard and can be widely found in the area of wireless resource allocation. The main idea of GBD is…

Information Theory · Computer Science 2020-10-16 Mengyuan Lee , Ning Ma , Guanding Yu , Huaiyu Dai

Exascale computing delivers the raw power to simulate ever larger and more chemically realistic systems, but realizing this potential requires codes that can efficiently use thousands of processors. Our real-space multigrid (RMG) density…

Materials Science · Physics 2026-01-19 R. J. Morelock , S. Bagchi , E. L. Briggs , W. Lu , J. Bernholc , P. Ganesh

TurboRVB is a computational package for {\it ab initio} Quantum Monte Carlo (QMC) simulations of both molecular and bulk electronic systems. The code implements two types of well established QMC algorithms: Variational Monte Carlo (VMC),…

We present an efficient implementation of ab initio many-body quantum embedding and local correlation methods for infinite periodic systems through translational symmetry adapted interpolative separable density fitting, an approach which…

Strongly Correlated Electrons · Physics 2026-01-26 Junjie Yang , Ning Zhang , Shunyue Yuan , Jincheng Yu , Hong-Zhou Ye , Garnet Chan

The numerical simulation of multiphase flows involving dispersed components with large scale disparities, such as the collisions between millimeter-sized bubbles and micron-sized mineral particles in flotation, poses a significant…

Fluid Dynamics · Physics 2026-05-21 Linfeng Jiang , Enrico Calzavarini , Dominik Krug

On behalf of the development team, I review the capabilities of the BAGEL program package in this article. BAGEL is a newly-developed full-fledged program package for electronic-structure computation in quantum chemistry, which is released…

Chemical Physics · Physics 2018-01-30 Toru Shiozaki

Quantum many-body scarring (QMBS) -- a recently discovered form of weak ergodicity breaking in strongly-interacting quantum systems -- presents opportunities for mitigating thermalization-induced decoherence in quantum information…

We put forward a user-friendly framework of the truncated Wigner approximation (TWA) for dissipative quantum many-body systems. Our approach is computationally affordable and it features a straightforward implementation. The leverage of the…

Quantum Physics · Physics 2025-09-11 Hossein Hosseinabadi , Oksana Chelpanova , Jamir Marino

The formation of the large-scale structure, the evolution and distribution of galaxies, quasars, and dark matter on cosmological scales, requires numerical simulations. Differentiable simulations provide gradients of the cosmological…

Instrumentation and Methods for Astrophysics · Physics 2022-11-21 Yin Li , Libin Lu , Chirag Modi , Drew Jamieson , Yucheng Zhang , Yu Feng , Wenda Zhou , Ngai Pok Kwan , François Lanusse , Leslie Greengard

This short note presents some variant schemes of boundary variation diminishing (BVD) algorithm in one dimension with the results of numerical tests for linear advection equation to facilitate practical use. In spite of being presented in…

Numerical Analysis · Mathematics 2017-08-04 Xi Deng , Bin Xie , Feng Xiao

Coulomb interaction, following an inverse-square force-law, quantifies the amount of force between two stationary and electrically charged particles. The long-range nature of Coulomb interactions poses a major challenge to molecular…

Computational Physics · Physics 2022-01-26 Jiuyang Liang , Pan Tan , Yue Zhao , Lei Li , Shi Jin , Liang Hong , Zhenli Xu

We present a general computational protocol for the evaluation of extensive molecular response properties in complex environments within a polarizable quantum embedding framework. The approach extends multilevel density functional theory…

Chemical Physics · Physics 2026-02-11 Alberto Barlini , Julien Bloino , Henrik Koch , Tommaso Giovannini

MLMOD is a software package for incorporating machine learning approaches and models into simulations of microscale mechanics and molecular dynamics in LAMMPS. Recent machine learning approaches provide promising data-driven approaches for…

Machine Learning · Computer Science 2023-10-24 Paul J. Atzberger

The stiff equation of state (EoS) giving the neutron-star mass of $2M_{\odot}$ suggests the existence of strongly repulsive many-body effect (MBE) not only in nucleon channels but also in hyperonic ones. As a specific model for MBE, the…

Nuclear Theory · Physics 2017-04-12 M. Isaka , Y. Yamamoto , Th. A. Rijken

Dynamic Mode Decomposition (DMD) is an unsupervised machine learning method that has attracted considerable attention in recent years owing to its equation-free structure, ability to easily identify coherent spatio-temporal structures in…

Machine Learning · Computer Science 2022-02-16 Alex Viguerie , Gabriel F. Barros , Malú Grave , Alessandro Reali , Alvaro L. G. A. Coutinho

This article presents svds-C, an open-source and high-performance C program for accurately and robustly computing truncated SVD, e.g. computing several largest singular values and corresponding singular vectors. We have re-implemented the…

Mathematical Software · Computer Science 2024-05-30 Xu Feng , Wenjian Yu , Yuyang Xie

It is well known that the number of particles should be scaled up to enable industrial scale simulation. The calculations are more computationally intensive when the motion of the surrounding fluid is considered. Besides the advances in…

Computational Physics · Physics 2014-07-28 Hao Zhang , F. Xavier Trias , Assensi Oliva , Dongmin Yang , Yuanqiang Tan , Shi Shu , Yong Sheng

Masked diffusion models (MDMs) have shown promise in language modeling, yet their scalability and effectiveness in core language tasks, such as text generation and language understanding, remain underexplored. This paper establishes the…

Artificial Intelligence · Computer Science 2025-03-03 Shen Nie , Fengqi Zhu , Chao Du , Tianyu Pang , Qian Liu , Guangtao Zeng , Min Lin , Chongxuan Li

Mechanistic understanding and rational design of complex chemical systems depend on fast and accurate predictions of electronic structures beyond individual building blocks. However, if the system exceeds hundreds of atoms, first-principles…

Chemical Physics · Physics 2026-04-13 Siqi Chen , Zhiqiang Wang , Yili Shen , Xianqi Deng , Xi Cheng , Cheng-Wei Ju , Jun Yi , Guo Ling , Dieaa Alhmoud , Hui Guan , Zhou Lin