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We study directed random graphs (random graphs whose edges are directed) as they evolve in discrete time by the addition of nodes and edges. For two distinct evolution strategies, one that forces the graph to a condition of near acyclicity…

Statistical Mechanics · Physics 2007-05-23 Valmir C. Barbosa , Raul Donangelo , Sergio R. Souza

We generalize the scattering transform to graphs and consequently construct a convolutional neural network on graphs. We show that under certain conditions, any feature generated by such a network is approximately invariant to permutations…

Information Theory · Computer Science 2020-09-10 Dongmian Zou , Gilad Lerman

We study the fixation probability of a mutant type when introduced into a resident population. As opposed to the usual assumption of constant pop- ulation size, we allow for stochastically varying population sizes. This is implemented by a…

Populations and Evolution · Quantitative Biology 2018-06-08 Peter Czuppon , Arne Traulsen

The Moran process is a random process that models the spread of genetic mutations through graphs. If the graph is connected, the process eventually reaches "fixation", where every vertex is a mutant, or "extinction", where no vertex is a…

Probability · Mathematics 2019-07-16 Leslie Ann Goldberg , John Lapinskas , David Richerby

In this paper, we propose a path following replicator dynamic, and investigate its potentials in uncovering the underlying cluster structure of a graph. The proposed dynamic is a generalization of the discrete replicator dynamic. The…

Machine Learning · Computer Science 2013-03-12 Hairong Liu , Longin Jan Latecki , Shuicheng Yan

We live in a world increasingly dominated by networks -- communications, social, information, biological etc. A central attribute of many of these networks is that they are dynamic, that is, they exhibit structural changes over time. While…

Networking and Internet Architecture · Computer Science 2010-12-02 Prithwish Basu , Amotz Bar-Noy , Ram Ramanathan , Matthew P. Johnson

The accumulation of beneficial mutations on many competing genetic backgrounds in rapidly adapting populations has a striking impact on evolutionary dynamics. This effect, known as clonal interference, causes erratic fluctuations in the…

Populations and Evolution · Quantitative Biology 2013-05-31 Katya Kosheleva , Michael Desai

Cooperative interactions pervade in a broad range of many-body populations, such as ecological communities, social organizations, and economic webs. We investigate the dynamics of a population of two equivalent species A and B that are…

Populations and Evolution · Quantitative Biology 2025-01-14 Jordi Piñero , S. Redner , Ricard Solé

Zero forcing in a graph refers to the evolution of vertex states under repeated application of a color change rule. Typically the states are chosen to be blue and white, and a forcing set is an initial set of blue vertices such that all of…

Combinatorics · Mathematics 2025-11-21 Daniela Ferrero , H. Tracy Hall , Leslie Hogben , Mark Hunnell , Ben Small

We study the competition between several advantageous mutants in an asexual population (clonal interference) as a function of the time between the appearance of the mutants, their selective advantages, and the rate of deleterious mutations.…

Biological Physics · Physics 2007-05-23 Paulo R. A. Campos , Christoph Adami , Claus O. Wilke

We consider a decentralized convex unconstrained optimization problem, where the cost function can be decomposed into a sum of strongly convex and smooth functions, associated with individual agents, interacting over a static or…

Optimization and Control · Mathematics 2023-12-12 Dmitry Metelev , Aleksandr Beznosikov , Alexander Rogozin , Alexander Gasnikov , Anton Proskurnikov

A permutation graph $G_\pi$ is a simple graph with vertices corresponding to the elements of $\pi$ and an edge between $i$ and $j$ when $i$ and $j$ are inverted in $\pi$. A set of vertices $D$ is said to dominate a graph $G$ when every…

A set $S\subseteq V$ of a graph $G=(V,E)$ is a dominating set if each vertex has a neighbor in $S$ or belongs to $S$. Dominating Set is the problem of deciding, given a graph $G$ and an integer $k\geq 1$, if $G$ has a dominating set of size…

Combinatorics · Mathematics 2023-04-20 Valentin Bouquet , François Delbot , Christophe Picouleau , Stéphane Rovedakis

Given a graph, does there exist an orientation of the edges such that the resulting directed graph is strongly connected? Robbins' theorem [Robbins, Am. Math. Monthly, 1939] states that such an orientation exists if and only if the graph is…

Data Structures and Algorithms · Computer Science 2017-08-25 Anders Aamand , Niklas Hjuler , Jacob Holm , Eva Rotenberg

This work formalizes the associational task of predicting node attribute evolution in temporal graphs from the perspective of learning equivariant representations. We show that node representations in temporal graphs can be cast into two…

Machine Learning · Computer Science 2023-03-29 Jianfei Gao , Bruno Ribeiro

We study spreading processes in temporal graphs, i. e., graphs whose connections change over time. These processes naturally model real-world phenomena such as infectious diseases or information flows. More precisely, we investigate how…

Data Structures and Algorithms · Computer Science 2021-07-21 Hendrik Molter , Malte Renken , Philipp Zschoche

The Moran process, as studied by Lieberman, Hauert and Nowak, is a randomised algorithm modelling the spread of genetic mutations in populations. The algorithm runs on an underlying graph where individuals correspond to vertices. Initially,…

Probability · Mathematics 2016-05-06 Andreas Galanis , Andreas Göbel , Leslie Ann Goldberg , John Lapinskas , David Richerby

Neural networks for structured data like graphs have been studied extensively in recent years. To date, the bulk of research activity has focused mainly on static graphs. However, most real-world networks are dynamic since their topology…

Machine Learning · Computer Science 2020-03-03 Changmin Wu , Giannis Nikolentzos , Michalis Vazirgiannis

We prove a characterization of all polynomial-time computable queries on the class of interval graphs by sentences of fixed-point logic with counting. More precisely, it is shown that on the class of unordered interval graphs, any query is…

Logic in Computer Science · Computer Science 2011-01-14 Bastian Laubner

We consider the population dynamics of a set of species whose network of catalytic interactions is described by a directed graph. The relationship between the attractors of this dynamics and the underlying graph theoretic structures like…

adap-org · Physics 2009-10-30 Sanjay Jain , Sandeep Krishna