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Accurate and efficient surrogate modeling is essential for modern computational science, and there are a staggering number of emulation methods to choose from. With new methods being developed all the time, comparing the relative strengths…

Computation · Statistics 2026-04-22 Kellin N. Rumsey , Graham C. Gibson , Devin Francom , Reid Morris

Obtaining a relevant dataset is central to conducting empirical studies in software engineering. However, in the context of mining software repositories, the lack of appropriate tooling for large scale mining tasks hinders the creation of…

Software Engineering · Computer Science 2023-06-21 Romain Lefeuvre , Jessie Galasso , Benoit Combemale , Houari Sahraoui , Stefano Zacchiroli

Reproducibility of computational research is critical for ensuring transparency, reliability and reusability. Challenges with computational reproducibility have been documented in several fields, but healthcare discrete-event simulation…

Other Quantitative Biology · Quantitative Biology 2025-09-17 Amy Heather , Thomas Monks , Alison Harper , Navonil Mustafee , Andrew Mayne

Many research fields are currently reckoning with issues of poor levels of reproducibility. Some label it a "crisis", and research employing or building Machine Learning (ML) models is no exception. Issues including lack of transparency,…

Software Engineering · Computer Science 2025-02-27 Harald Semmelrock , Tony Ross-Hellauer , Simone Kopeinik , Dieter Theiler , Armin Haberl , Stefan Thalmann , Dominik Kowald

Recent developments in machine learning interatomic potentials (MLIPs) have empowered even non-experts in machine learning to train MLIPs for accelerating materials simulations. However, the current literature lacks clear standards for…

Chemical Physics · Physics 2024-01-05 Tristan Maxson , Ademola Soyemi , Benjamin W. J. Chen , Tibor Szilvási

This work introduces a companion reproducible paper with the aim of allowing the exact replication of the methods, experiments, and results discussed in a previous work [5]. In that parent paper, we proposed many and varied techniques for…

Data Structures and Algorithms · Computer Science 2019-12-30 Antonio Fariña , Miguel A. Martínez-Prieto , Francisco Claude , Gonzalo Navarro , Juan J. Lastra-Díaz , Nicola Prezza , Diego Seco

With the increased interest in computational sciences, machine learning (ML), pattern recognition (PR) and big data, governmental agencies, academia and manufacturers are overwhelmed by the constant influx of new algorithms and techniques…

Software Engineering · Computer Science 2017-07-28 André Anjos , Laurent El-Shafey , Sébastien Marcel

This paper investigates the conceptual relationship between openness and reproducibility using a model-centric approach, heavily informed by probability theory and statistics. We first clarify the concepts of reliability, auditability,…

Other Statistics · Statistics 2019-10-30 Bert Baumgaertner , Berna Devezer , Erkan O. Buzbas , Luis G. Nardin

While end-to-end neural machine translation (NMT) has made remarkable progress recently, NMT systems only rely on parallel corpora for parameter estimation. Since parallel corpora are usually limited in quantity, quality, and coverage,…

Computation and Language · Computer Science 2016-12-13 Yong Cheng , Wei Xu , Zhongjun He , Wei He , Hua Wu , Maosong Sun , Yang Liu

Over the recent years the importance of numerical experiments has gradually been more recognized. Nonetheless, sufficient documentation of how computational results have been obtained is often not available. Especially in the scientific…

Mathematical Software · Computer Science 2021-05-10 Jörg Fehr , Jan Heiland , Christian Himpe , Jens Saak

Language Models (LLMs), such as transformer-based neural networks trained on billions of parameters, have become increasingly prevalent in software engineering (SE). These models, trained on extensive datasets that include code…

Software Engineering · Computer Science 2025-02-18 Daniel Rodriguez-Cardenas , Alejandro Velasco , Denys Poshyvanyk

Data duplication during pretraining can degrade generalization and lead to memorization, motivating aggressive deduplication pipelines. However, at web scale, it is unclear what constitutes a ``duplicate'': beyond surface-form matches,…

Machine Learning · Computer Science 2026-03-10 Joshua Kazdan , Noam Levi , Rylan Schaeffer , Jessica Chudnovsky , Abhay Puri , Bo He , Mehmet Donmez , Sanmi Koyejo , David Donoho

Large Language Models (LLMs) are widely used in software engineering (SE) research and practice, yet their non-determinism, opaque training data, and rapidly evolving models threaten the reproducibility and replicability of empirical…

Large Language Models (LLMs) are now widely used for query reformulation and expansion in Information Retrieval, with many studies reporting substantial effectiveness gains. However, these results are typically obtained under heterogeneous…

Information Retrieval · Computer Science 2026-05-01 Amin Bigdeli , Radin Hamidi Rad , Hai Son Le , Mert Incesu , Negar Arabzadeh , Charles L. A. Clarke , Ebrahim Bagheri

Although a standard in natural science, reproducibility has been only episodically applied in experimental computer science. Scientific papers often present a large number of tables, plots and pictures that summarize the obtained results,…

Digital Libraries · Computer Science 2017-09-06 Fernando Chirigati , Rebecca Capone , Dennis Shasha , Remi Rampin , Juliana Freire

The reproducibility of software environments is a critical concern in modern software engineering, with ramifications ranging from the effectiveness of collaboration workflows to software supply chain security and scientific…

Software Engineering · Computer Science 2026-01-21 Julien Malka , Stefano Zacchiroli , Théo Zimmermann

Despite the potential of synthetic medical data for augmenting and improving the generalizability of deep learning models, memorization in generative models can lead to unintended leakage of sensitive patient information and limit model…

Image and Video Processing · Electrical Eng. & Systems 2025-02-25 Orhun Utku Aydin , Alexander Koch , Adam Hilbert , Jana Rieger , Felix Lohrke , Fujimaro Ishida , Satoru Tanioka , Dietmar Frey

The availability of realistic simulated corpora is of key importance for the future progress of distant speech recognition technology. The reliability, flexibility and low computational cost of a data simulation process may ultimately allow…

Audio and Speech Processing · Electrical Eng. & Systems 2017-11-28 Mirco Ravanelli , Piergiorgio Svaizer , Maurizio Omologo

Reproducibility is an important requirement in evolutionary computation, where results largely depend on computational experiments. In practice, reproducibility relies on how algorithms, experimental protocols, and artifacts are documented…

Neural and Evolutionary Computing · Computer Science 2026-02-10 Francesca Da Ros , Tarik Začiragić , Aske Plaat , Thomas Bäck , Niki van Stein

Code reproduction is a cornerstone of scientific validity, yet it remains a formidable challenge in computer networking research due to the scarcity of open-source implementations and the complexity of heterogeneous system architectures.…

Networking and Internet Architecture · Computer Science 2026-02-17 Yining Jiang , Yunxin Xu , Wenyun Xu , Yufan Zhu , Tangtang He , Haiying Huang , Letian Zhu , Qingyu Song , Qiang Su , Lizhao You , Lu Tang , Wanjin Feng , Yuchao Zhang , Linghe Kong , Qiao Xiang , Jiwu Shu
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