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The Smatch metric is a popular method for evaluating graph distances, as is necessary, for instance, to assess the performance of semantic graph parsing systems. However, we observe some issues in the metric that jeopardize meaningful…

Computation and Language · Computer Science 2025-10-17 Juri Opitz

Multimodal large language models (MLLMs) achieve strong performance by jointly processing inputs from multiple modalities, such as vision, audio, and language. However, building such models or extending them to new modalities often requires…

Machine Learning · Computer Science 2026-03-24 Md Kaykobad Reza , Ameya Patil , Edward Ayrapetian , M. Salman Asif

Validation metrics are key for the reliable tracking of scientific progress and for bridging the current chasm between artificial intelligence (AI) research and its translation into practice. However, increasing evidence shows that…

Synthetic Aperture Radar (SAR) and optical imagery provide complementary strengths that constitute the critical foundation for transcending single-modality constraints and facilitating cross-modal collaborative processing and intelligent…

Computer Vision and Pattern Recognition · Computer Science 2026-02-06 Peihao Wu , Yongxiang Yao , Yi Wan , Wenfei Zhang , Ruipeng Zhao , Jiayuan Li , Yongjun Zhang

Cellular signaling is essential in information processing and decision making. Therefore, a variety of experimental approaches have been developed to study signaling on bulk and single-cell level. Single-cell measurements of signaling…

Quantitative Methods · Quantitative Biology 2019-04-18 Carolin Loos , Jan Hasenauer

In the rapid development of artificial intelligence, solving complex AI tasks is a crucial technology in intelligent mobile networks. Despite the good performance of specialized AI models in intelligent mobile networks, they are unable to…

Artificial Intelligence · Computer Science 2023-10-16 Lei Yao , Yong Zhang , Zilong Yan , Jialu Tian

High-dimensional multimodal data arises in many scientific fields. The integration of multimodal data becomes challenging when there is no known correspondence between the samples and the features of different datasets. To tackle this…

Quantitative Methods · Quantitative Biology 2023-04-11 Kathryn Dover , Zixuan Cang , Anna Ma , Qing Nie , Roman Vershynin

As artificial intelligence (AI) systems approach and surpass expert human performance across a broad range of tasks, obtaining high-quality human supervision for evaluation and training becomes increasingly challenging. Our focus is on…

Machine Learning · Computer Science 2026-02-25 Ren Yin , Takashi Ishida , Masashi Sugiyama

High-throughput technologies such as next generation sequencing allow biologists to observe cell function with unprecedented resolution, but the resulting datasets are too large and complicated for humans to understand without the aid of…

Applications · Statistics 2021-10-08 David S. Watson

Aligning protein interaction networks (PPI) of two or more organisms consists of finding a mapping of the nodes (proteins) of the networks that captures important structural and functional associations (similarity). It is a well studied but…

Molecular Networks · Quantitative Biology 2020-10-12 Concettina Guerra , Pietro Hiram Guzzi

Datasets are growing not just in size but in complexity, creating a demand for rich models and quantification of uncertainty. Bayesian methods are an excellent fit for this demand, but scaling Bayesian inference is a challenge. In response…

Machine Learning · Statistics 2016-03-23 Elaine Angelino , Matthew James Johnson , Ryan P. Adams

Artificial Intelligence (AI) has the potential to revolutionize diagnosis and segmentation in medical imaging. However, development and clinical implementation face multiple challenges including limited data availability, lack of…

Image and Video Processing · Electrical Eng. & Systems 2025-01-22 Zelong Liu , Andrew Tieu , Nikhil Patel , Georgios Soultanidis , Louisa Deyer , Ying Wang , Sean Huver , Alexander Zhou , Yunhao Mei , Zahi A. Fayad , Timothy Deyer , Xueyan Mei

Network alignment consists of finding a structure-preserving correspondence between the nodes of two correlated, but not necessarily identical, networks. This problem finds applications in a wide variety of fields, from the alignment of…

Social and Information Networks · Computer Science 2019-05-23 Mikhail Hayhoe , Francisco Barreras , Hamed Hassani , Victor M. Preciado

A leading proposal for aligning artificial superintelligence (ASI) is to use AI agents to automate an increasing fraction of alignment research as capabilities improve. We argue that, even when research agents are not scheming to…

Artificial Intelligence · Computer Science 2026-05-18 Aleksandr Bowkis , Marie Davidsen Buhl , Jacob Pfau , Geoffrey Irving

Mathematical methods together with measurements of single-cell dynamics provide unprecedented means to reconstruct intracellular processes that are only partly or indirectly accessible experimentally. To obtain reliable reconstructions the…

Quantitative Methods · Quantitative Biology 2014-01-14 Christoph Zechner , Michael Unger , Serge Pelet , Matthias Peter , Heinz Koeppl

Artificial Intelligence (AI) holds great promise for transforming healthcare, particularly in disease diagnosis, prognosis, and patient care. The increasing availability of digital medical data, such as images, omics, biosignals, and…

Artificial Intelligence · Computer Science 2025-10-17 Pedro A. Moreno-Sánchez , Javier Del Ser , Mark van Gils , Jussi Hernesniemi

Despite advancements in Computer-Aided Diagnosis (CAD) systems, breast cancer remains one of the leading causes of cancer-related deaths among women worldwide. Recent breakthroughs in Artificial Intelligence (AI) have shown significant…

Image and Video Processing · Electrical Eng. & Systems 2025-05-09 Farnoush Bayatmakou , Reza Taleei , Milad Amir Toutounchian , Arash Mohammadi

This research introduces the Multilevel Embedding Association Test (ML-EAT), a method designed for interpretable and transparent measurement of intrinsic bias in language technologies. The ML-EAT addresses issues of ambiguity and difficulty…

Computation and Language · Computer Science 2024-08-29 Robert Wolfe , Alexis Hiniker , Bill Howe

Deep learning-based AI models have been extensively applied in genomics, achieving remarkable success across diverse applications. As these models gain prominence, there exists an urgent need for interpretability methods to establish…

Genomics · Quantitative Biology 2025-05-16 Chenyu Wang , Chaoying Zuo , Zihan Su , Yuhang Xing , Lu Li , Maojun Wang , Zeyu Zhang

We propose SETI (Systematicity Evaluation of Textual Inference), a novel and comprehensive benchmark designed for evaluating pre-trained language models (PLMs) for their systematicity capabilities in the domain of textual inference.…

Computation and Language · Computer Science 2023-05-25 Xiyan Fu , Anette Frank