English
Related papers

Related papers: Machine Learning-guided Lipid Nanoparticle Design …

200 papers

Data-driven, machine learning (ML) models of atomistic interactions are often based on flexible and non-physical functions that can relate nuanced aspects of atomic arrangements into predictions of energies and forces. As a result, these…

Materials Science · Physics 2024-05-15 Bartosz Barzdajn , Christopher P. Race

Designing messenger RNA (mRNA) sequences for a fixed target protein requires searching an exponentially large synonymous space while optimizing properties that affect stability and downstream performance. This is challenging because…

Biomolecules · Quantitative Biology 2026-03-09 Feipeng Yue , Ning Dai , Wei Yu Tang , Tianshuo Zhou , David H. Mathews , Liang Huang

Efficient design and discovery of target-driven molecules is a critical step in facilitating lead optimization in drug discovery. Current approaches to develop molecules for a target protein are intuition-driven, hampered by slow iterative…

Machine Learning · Computer Science 2022-05-24 Andrew D. McNaughton , Mridula S. Bontha , Carter R. Knutson , Jenna A. Pope , Neeraj Kumar

Size-based separation of bioparticles/cells is crucial to a variety of biomedical processing steps for applications such as exosomes and DNA isolation. Design and improvement of such microfluidic devices is a challenge to best answer the…

Neural and Evolutionary Computing · Computer Science 2022-08-31 Farzad Vatandoust , Hoseyn A. Amiri , Sima Mas-hafi

This study introduces a pioneering machine learning (ML)-based approach for predicting the impact of nanoparticle (NP) carriers on the functionality of attached small biomolecules. It was hypothesised that NP interactions induce measurable…

Quantitative Methods · Quantitative Biology 2026-03-23 Mariya L. Ivanova , Michael Nicholls , Nicola Russo , Gueorgui Mihaylov , Konstantin Nikolic

A major driver behind the success of modern machine learning algorithms has been their ability to process ever-larger amounts of data. As a result, the use of distributed systems in both research and production has become increasingly…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-10 Fan Yang , Gabriel Barth-Maron , Piotr Stańczyk , Matthew Hoffman , Siqi Liu , Manuel Kroiss , Aedan Pope , Alban Rrustemi

Mixed-integer linear programs (MILPs) are extensively used to model practical problems such as planning and scheduling. A prominent method for solving MILPs is large neighborhood search (LNS), which iteratively seeks improved solutions…

Optimization and Control · Mathematics 2024-12-12 Wenbo Liu , Akang Wang , Wenguo Yang , Qingjiang Shi

Aiming to reduce the computational cost of numerical simulations, a convolutional neural network (CNN) and a multi-layer perceptron (MLP) are introduced to build a surrogate model to approximate radiative heat transfer solutions in a 2-D…

Systems and Control · Electrical Eng. & Systems 2025-07-14 Axel TahmasebiMoradi , Vincent Ren , Benjamin Le-Creurer , Chetra Mang , Mouadh Yagoubi

The message-passing mechanism helps Graph Neural Networks (GNNs) achieve remarkable results on various node classification tasks. Nevertheless, the recursive nodes fetching and aggregation in message-passing cause inference latency when…

Machine Learning · Computer Science 2022-10-19 Jie Chen , Shouzhen Chen , Mingyuan Bai , Junbin Gao , Junping Zhang , Jian Pu

All simulation approaches eventually face limits in computational scalability when applied to large spatiotemporal domains. This challenge becomes especially apparent in molecular-level particle simulations, where high spatial and temporal…

Computational Physics · Physics 2025-10-23 Matthias Busch , Gregor Häfner , Jiayu Xie , Marius Tacke , Marcus Müller , Christian J. Cyron , Roland C. Aydin

Recent years have witnessed growing interest in the application of deep neural networks (DNNs) for receiver design, which can potentially be applied in complex environments without relying on knowledge of the channel model. However, the…

Information Theory · Computer Science 2023-02-14 Tomer Raviv , Sangwoo Park , Osvaldo Simeone , Yonina C. Eldar , Nir Shlezinger

Machine learning (ML) techniques and atomistic modeling have rapidly transformed materials design and discovery. Specifically, generative models can swiftly propose promising materials for targeted applications. However, the predicted…

Computational Physics · Physics 2023-11-10 Gang Seob Jung , Sangkeun Lee , Jong Youl Choi

Ensembles of Deep Neural Networks (DNNs) have achieved qualitative predictions but they are computing and memory intensive. Therefore, the demand is growing to make them answer a heavy workload of requests with available computational…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-08-31 Pierrick Pochelu , Serge G. Petiton , Bruno Conche

Lipreading has witnessed a lot of progress due to the resurgence of neural networks. Recent works have placed emphasis on aspects such as improving performance by finding the optimal architecture or improving generalization. However, there…

Computer Vision and Pattern Recognition · Computer Science 2021-06-03 Pingchuan Ma , Brais Martinez , Stavros Petridis , Maja Pantic

In medical image analysis, transfer learning is a powerful method for deep neural networks (DNNs) to generalize well on limited medical data. Prior efforts have focused on developing pre-training algorithms on domains such as lung…

Computer Vision and Pattern Recognition · Computer Science 2023-05-30 Yixiong Chen , Li Liu , Jingxian Li , Hua Jiang , Chris Ding , Zongwei Zhou

We introduce NADA, the first framework to autonomously design network algorithms by leveraging the generative capabilities of large language models (LLMs). Starting with an existing algorithm implementation, NADA enables LLMs to create a…

Networking and Internet Architecture · Computer Science 2024-10-23 Zhiyuan He , Aashish Gottipati , Lili Qiu , Xufang Luo , Kenuo Xu , Yuqing Yang , Francis Y. Yan

We demonstrate a smart laser-diffraction analysis technique for particle mixture identification. We retrieve information about the size, geometry, and ratio concentration of two-component heterogeneous particle mixtures with an efficiency…

Image and Video Processing · Electrical Eng. & Systems 2022-02-03 Arturo Villegas , Mario A. Quiroz-Juarez , Alfred U'Ren , Juan P. Torres , Roberto de J. Leon-Montiel

Recently, Multilayer Perceptron (MLP) becomes the hotspot in the field of computer vision tasks. Without inductive bias, MLPs perform well on feature extraction and achieve amazing results. However, due to the simplicity of their…

Computer Vision and Pattern Recognition · Computer Science 2022-03-29 Wenshuo Li , Hanting Chen , Jianyuan Guo , Ziyang Zhang , Yunhe Wang

In an ever expanding set of research and application areas, deep neural networks (DNNs) set the bar for algorithm performance. However, depending upon additional constraints such as processing power and execution time limits, or…

Machine Learning · Computer Science 2021-06-22 Nathan Dahlin , Krishna Chaitanya Kalagarla , Nikhil Naik , Rahul Jain , Pierluigi Nuzzo

The mRNA optimization is critical for therapeutic and biotechnological applications, since sequence features directly govern protein expression levels and efficacy. However, current methods face significant challenges in simultaneously…

Quantitative Methods · Quantitative Biology 2025-06-02 Zheng Gong , Ziyi Jiang , Weihao Gao , Deng Zhuo , Lan Ma
‹ Prev 1 4 5 6 7 8 10 Next ›