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One of the most important concepts in biological network analysis is that of network motifs, which are patterns of interconnections that occur in a given network at a frequency higher than expected in a random network. In this work we are…

Discrete Mathematics · Computer Science 2020-05-29 Diego P Rubert , Eloi Araujo , Marco A Stefanes , Jens Stoye , Fábio V Martinez

Percolation, the formation of a macroscopic connected component, is a key feature in the description of complex networks. The dynamical properties of a variety of systems can be understood in terms of percolation, including the robustness…

Statistical Mechanics · Physics 2013-06-24 Shane Squires , Katherine Sytwu , Diego Alcala , Thomas Antonsen , Edward Ott , Michelle Girvan

We study the temporal percolation properties of temporal networks by taking as a representative example the recently proposed activity driven network model [N. Perra et al., Sci. Rep. 2, 469 (2012)]. Building upon an analytical framework…

Statistical Mechanics · Physics 2015-06-18 Michele Starnini , Romualdo Pastor Satorras

Understanding the origins of complexity is a fundamental challenge with implications for biological and technological systems. Network theory emerges as a powerful tool to model complex systems. Networks are an intuitive framework to…

Disordered Systems and Neural Networks · Physics 2024-10-22 Blai Vidiella , Salva Duran-Nebreda , Sergi Valverde

Hypergraphs, increasingly utilised to model complex and diverse relationships in modern networks, have gained significant attention for representing intricate higher-order interactions. Among various challenges, cohesive subgraph discovery…

Social and Information Networks · Computer Science 2025-07-14 Dahee Kim , Hyewon Kim , Song Kim , Minseok Kim , Junghoon Kim , Yeon-Chang Lee , Sungsu Lim

Motivated by the bootstrap percolation process for graphs, we define a new, high-order generalisation to $k$-uniform hypergraphs, in which we infect $j$-sets of vertices for some integer $1\le j \le k-1$. We investigate the smallest…

Combinatorics · Mathematics 2022-01-25 Oliver Cooley , Julian Zalla

We introduce a new kind of percolation on finite graphs called jigsaw percolation. This model attempts to capture networks of people who innovate by merging ideas and who solve problems by piecing together solutions. Each person in a social…

Probability · Mathematics 2015-06-22 Charles D. Brummitt , Shirshendu Chatterjee , Partha S. Dey , David Sivakoff

Many problems, especially those with a composite structure, can naturally be expressed in higher order logic. From a KR perspective modeling these problems in an intuitive way is a challenging task. In this paper we study the graph mining…

Logic in Computer Science · Computer Science 2016-09-01 Matthias van der Hallen , Sergey Paramonov , Michael Leuschel , Gerda Janssens

We present exact solutions for the size of the giant connected component (GCC) of graphs composed of higher-order homogeneous cycles, including weak cycles and cliques, following bond percolation. We use our theoretical result to find the…

Physics and Society · Physics 2021-08-11 Peter Mann , V Anne Smith , John Mitchell , Christopher Jefferson , Simon Dobson

Graph neural networks can accurately predict the chemical properties of many molecular systems, but their suitability for large, macromolecular assemblies such as gels is unknown. Here, graph neural networks were trained and optimised for…

Computational Physics · Physics 2025-04-14 D. A. Head

We provide an explicit solution of the problem of level-set percolation for multivariate Gaussians defined in terms of weighted graph Laplacians on complex networks. The solution requires an analysis of the heterogeneous micro-structure of…

Disordered Systems and Neural Networks · Physics 2024-04-09 Reimer Kuehn

We study the implications of the modeling choice to use a graph, instead of a hypergraph, to represent real-world interconnected systems whose constituent relationships are of higher order by nature. Such a modeling choice typically…

Machine Learning · Computer Science 2024-01-17 Yanbang Wang , Jon Kleinberg

Classical blockmodel is known as the simplest among models of networks with community structure. The model can be also seen as an extremely simply example of interconnected networks. For this reason, it is surprising that the percolation…

Disordered Systems and Neural Networks · Physics 2014-09-23 Maksymilian Bujok , Piotr Fronczak , Agata Fronczak

Bootstrap percolation in (random) graphs is a contagion dynamics among a set of vertices with certain threshold levels. The process is started by a set of initially infected vertices, and an initially uninfected vertex with threshold $k$…

Probability · Mathematics 2022-11-03 Nils Detering , Jimin Lin

A theory is developed which uses "networks" (directed acyclic graphs with some extra structure) as a formalism for expressions in multilinear algebra. It is shown that this formalism is valid for arbitrary PROPs (short for 'PROducts and…

Rings and Algebras · Mathematics 2012-04-12 Lars Hellström

Introduced the quantitative measure of the structural complexity of the graph (complex network, etc.) based on a procedure similar to the renormalization process, considering the difference between actual and averaged graph structures on…

Physics and Society · Physics 2024-06-05 A. A. Snarskii

Network-based modeling of complex systems and data using the language of graphs has become an essential topic across a range of different disciplines. Arguably, this graph-based perspective derives its success from the relative simplicity…

Social and Information Networks · Computer Science 2023-08-11 Christian Bick , Elizabeth Gross , Heather A. Harrington , Michael T. Schaub

Percolation processes on random networks have been the subject of intense research activity over the last decades: the overall phenomenology of standard percolation on uncorrelated and unclustered topologies is well known. Still some…

Statistical Mechanics · Physics 2024-12-06 Lorenzo Cirigliano , Gábor Timár , Claudio Castellano

Random graph models have been instrumental in characterizing complex networks, but chemical reaction networks (CRNs) are better represented as hypergraphs. Traditional models of random CRNs often reduce CRNs to bipartite graphs,…

Statistical Mechanics · Physics 2025-07-15 Shesha Gopal Marehalli Srinivas , Massimiliano Esposito , Nahuel Freitas

We study entanglement percolation in qubit-based planar quantum network models of arbitrary topology, where neighboring nodes are initially connected by pure states with quenched disorder in their entanglement. To address this, we develop a…

Quantum Physics · Physics 2025-06-27 Andrea De Girolamo , Giuseppe Magnifico , Cosmo Lupo