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Lately, there is a growing interest in dynamic string matching problems. Specifically, the dynamic Longest Common Factor problem has been researched and some interesting results has been reached. In this paper we examine another classic…
The maximum clique (MC) problem is a challenging graph mining problem which, due to its NP-hard nature, can take a substantial amount of execution time. The MC problem is dominated by set intersection operations similar to Maximal Clique…
Given a sequence of n numbers, the Maximum Consecutive Subsums Problem (MCSP) asks for the maximum consecutive sum of lengths l for each l = 1,...,n. No algorithm is known for this problem which is significantly better than the naive…
Approximating the length of the longest increasing sequence (LIS) of an array is a well-studied problem. We study this problem in the data stream model, where the algorithm is allowed to make a single left-to-right pass through the array…
In the Shortest Common Superstring problem (SCS), one needs to find the shortest superstring for a set of strings. While SCS is NP-hard and MAX-SNP-hard, the Greedy Algorithm "choose two strings with the largest overlap; merge them; repeat"…
Given a sequence $S$ of length $n$, a letter-duplicated subsequence is a subsequence of $S$ in the form of $x_1^{d_1}x_2^{d_2}\cdots x_k^{d_k}$ with $x_i\in\Sigma$, $x_j\neq x_{j+1}$ and $d_i\geq 2$ for all $i$ in $[k]$ and $j$ in $[k-1]$.…
Given several number sequences, determining the longest common subsequence is a classical problem in computer science. This problem has applications in bioinformatics, especially determining transposable genes. Nevertheless, related works…
Continual learning, also known as incremental learning or life-long learning, stands at the forefront of deep learning and AI systems. It breaks through the obstacle of one-way training on close sets and enables continuous adaptive learning…
The use of network based approaches to model and analyse large datasets is currently a growing research field. For instance in biology and medicine, networks are used to model interactions among biological molecules as well as relations…
Directed acyclic graphs (DAGs) are fundamental structures used across many scientific fields. A key concept in DAGs is the least common ancestor (LCA), which plays a crucial role in understanding hierarchical relationships. Surprisingly…
Retrieval-Augmented Generation (RAG) mitigates the hallucination problem of Large Language Models (LLMs) by incorporating external knowledge. Recursive summarization constructs a hierarchical summary tree by clustering text chunks,…
We consider the learning and communication complexity of subsequence containment. In the learning problem, we seek to learn a classifier that positively labels a binary string $x$ if it contains a fixed binary string $y$ as a subsequence.…
Directed Acylic Graphs with a single entry vertex and a single exit vertex (st-DAGs) have many applications. For instance, they are frequently used for modelling flow problems or precedence conditions among tasks, work packages, etc.. This…
Understanding the decision-making processes of large language models (LLMs) is essential for their trustworthy development and deployment. However, current interpretability methods often face challenges such as low resolution and high…
A large number of deep learning models have been proposed for the text matching problem, which is at the core of various typical natural language processing (NLP) tasks. However, existing deep models are mainly designed for the semantic…
Two important similarity measures between sequences are the longest common subsequence (LCS) and the dynamic time warping distance (DTWD). The computations of these measures for two given sequences are central tasks in a variety of…
In this paper, we describe a new type of match between a pattern and a text that aren't necessarily maximal in the query, but still contain useful matching information: locally maximal exact matches (LEMs). There are usually a large amount…
The constrained LCS problem asks one to find a longest common subsequence of two input strings $A$ and $B$ with some constraints. The STR-IC-LCS problem is a variant of the constrained LCS problem, where the solution must include a given…
We study the construction of $d$-deletion-correcting binary codes by formulating the problem as a Maximum Clique Problem (MCP). In this formulation, vertices represent candidate codewords and edges connect pairs whose longest common…
Recent progress in large language models has renewed interest in how multi-step reasoning is represented internally. While prior work often treats reasoning as a linear chain, many reasoning problems are more naturally modeled as directed…