Related papers: Edge-set reduction to efficiently solve the graph …
Set covering problem is an important class of combinatorial optimization problems, which has been widely applied and studied in many fields. In this paper, we propose an improved column generation algorithm with neural prediction (CG-P) for…
We study the problem of coloring a given graph using a small number of colors in several well-established models of computation for big data. These include the data streaming model, the general graph query model, the massively parallel…
A parallel genetic algorithm (GA) implemented on GPU clusters is proposed to solve the Uncapacitated Single Allocation p-Hub Median problem. The GA uses binary and integer encoding and genetic operators adapted to this problem. Our GA is…
Edge perturbation is a basic method to modify graph structures. It can be categorized into two veins based on their effects on the performance of graph neural networks (GNNs), i.e., graph data augmentation and attack. Surprisingly, both…
The survey provides an overview of the developing area of parameterized algorithms for graph modification problems. We concentrate on edge modification problems, where the task is to change a small number of adjacencies in a graph in order…
We study the problem of distance-preserving graph compression for weighted paths and trees. The problem entails a weighted graph $G = (V, E)$ with non-negative weights, and a subset of edges $E^{\prime} \subset E$ which needs to be removed…
We study the parameterized complexity of a broad class of problems called "local graph partitioning problems" that includes the classical fixed cardinality problems as max k-vertex cover, k-densest subgraph, etc. By developing a technique…
An instance of the graph-constrained max-cut (GCMC) problem consists of (i) an undirected graph G and (ii) edge-weights on a complete undirected graph on the same vertex set. The objective is to find a subset of vertices satisfying some…
Graph coarsening reduces the size of a graph while preserving certain properties. Most existing methods preserve either spectral or spatial characteristics. Recent research has shown that preserving topological features helps maintain the…
This paper presents a new type of genetic algorithm for the set covering problem. It differs from previous evolutionary approaches first because it is an indirect algorithm, i.e. the actual solutions are found by an external decoder…
Computational Pangenomics is an emerging field that studies genetic variation using a graph structure encompassing multiple genomes. Visualizing pangenome graphs is vital for understanding genome diversity. Yet, handling large graphs can be…
We introduce the partition function of edge-colored graph homomorphisms, of which the usual partition function of graph homomorphisms is a specialization, and present an efficient algorithm to approximate it in a certain domain. Corollaries…
The ability to compute similarity scores between graphs based on metrics such as Graph Edit Distance (GED) is important in many real-world applications. Computing exact GED values is typically an NP-hard problem and traditional algorithms…
The Gaussian process (GP) regression can be severely biased when the data are contaminated by outliers. This paper presents a new robust GP regression algorithm that iteratively trims the most extreme data points. While the new algorithm…
The evolution of gene regulatory networks in variable environments poses Multi-objective Optimization Problem (MOP), where the expression levels of genes must be tuned to meet the demands of each environment. When formalized in the context…
Say that an edge of a graph G dominates itself and every other edge adjacent to it. An edge dominating set of a graph G = (V,E) is a subset of edges E' of E which dominates all edges of G. In particular, if every edge of G is dominated by…
This paper presents a novel meta algorithm, Partition-Merge (PM), which takes existing centralized algorithms for graph computation and makes them distributed and faster. In a nutshell, PM divides the graph into small subgraphs using our…
The focus of this paper is two fold. Firstly, we present a logical approach to graph modification problems such as minimum node deletion, edge deletion, edge augmentation problems by expressing them as an expression in first order (FO)…
Balanced partitioning is often a crucial first step in solving large-scale graph optimization problems, e.g., in some cases, a big graph can be chopped into pieces that fit on one machine to be processed independently before stitching the…
Cartesian Genetic Programming (CGP) suffers from a specific limitation: Positional bias, a phenomenon in which mostly genes at the start of the genome contribute to a program output, while genes at the end rarely do. This can lead to an…