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In this paper we investigate the colorful components framework, motivated by applications emerging from comparative genomics. The general goal is to remove a collection of edges from an undirected vertex-colored graph $G$ such that in the…

Data Structures and Algorithms · Computer Science 2013-11-07 Anna Adamaszek , Alexandru Popa

Protein structure prediction can be shown to be an NP-hard problem; the number of conformations grows exponentially with the number of residues. The native conformations of proteins occupy a very small subset of these, hence an exploratory,…

Chemical Physics · Physics 2008-02-03 Mehul M. Khimasia , Peter V. Coveney

Genetic algorithm (GA) is typically used to solve nonlinear model predictive control's optimization problem. However, the size of the search space in which the GA searches for the optimal control inputs is crucial for its applicability to…

Optimization and Control · Mathematics 2025-01-22 Eslam Mostafa , Hussein A. Aly , Ahmed Elliethy

In graph modification problems, one is given a graph G and the goal is to apply a minimum number of modification operations (such as edge deletions) to G such that the resulting graph fulfills a certain property. For example, the Cluster…

Data Structures and Algorithms · Computer Science 2016-06-13 Christian Komusiewicz , André Nichterlein , Rolf Niedermeier

We study the problem of edge partitioning, where the goal is to partition the edge set of a graph into several parts. The replication factor of a vertex $v$ is the number of parts that contain edges incident to $v$. The goal is to minimize…

Discrete Mathematics · Computer Science 2026-05-08 Alexander Yakunin , Andrey Kupavskii , Alexander Sushin , Stanislav Moiseev

Traditional verification methods in chip design are highly time-consuming and computationally demanding, especially for large scale circuits. Graph neural networks (GNNs) have gained popularity as a potential solution to improve…

Machine Learning · Computer Science 2025-12-15 Kiran Thorat , Hongwu Peng , Yuebo Luo , Xi Xie , Shaoyi Huang , Amit Hasan , Jiahui Zhao , Yingjie Li , Zhijie Shi , Cunxi Yu , Caiwen Ding

Genetic Programming (GP) is an evolutionary algorithm commonly used for machine learning tasks. In this paper we present a method that allows GP to transform the representation of a large-scale machine learning dataset into a more compact…

Neural and Evolutionary Computing · Computer Science 2018-02-21 Lino Rodriguez-Coayahuitl , Alicia Morales-Reyes , Hugo Jair Escalante

Graph neural networks (GNN) have achieved state-of-the-art performance on various industrial tasks. However, the poor efficiency of GNN inference and frequent Out-Of-Memory (OOM) problem limit the successful application of GNN on edge…

Machine Learning · Computer Science 2021-04-13 Ao Zhou , Jianlei Yang , Yeqi Gao , Tong Qiao , Yingjie Qi , Xiaoyi Wang , Yunli Chen , Pengcheng Dai , Weisheng Zhao , Chunming Hu

A common way of partitioning graphs is through minimum cuts. One drawback of classical minimum cut methods is that they tend to produce small groups, which is why more balanced variants such as normalized and ratio cuts have seen more…

Machine Learning · Computer Science 2024-10-07 Chakib Fettal , Lazhar Labiod , Mohamed Nadif

The MaxCut problem is a fundamental problem in Combinatorial Optimization, with significant implications across diverse domains such as logistics, network design, and statistical physics. The algorithm represents innovative approaches that…

Quantum Physics · Physics 2025-01-03 Paulo A. Viana , Fernando M. de Paula Neto

Genetic programming (GP) is an evolutionary computation technique to solve problems in an automated, domain-independent way. Rather than identifying the optimum of a function as in more traditional evolutionary optimization, the aim of GP…

Neural and Evolutionary Computing · Computer Science 2019-05-15 Andrei Lissovoi , Pietro S. Oliveto

Given an undirected graph G, the edge orientation problem asks for assigning a direction to each edge to convert G into a directed graph. The aim is to minimize the maximum out degree of a vertex in the resulting directed graph. This…

Data Structures and Algorithms · Computer Science 2024-04-23 H. Reinstädtler , C. Schulz , B. Uçar

The potential benefit of migrating software design from Structured to Object Oriented Paradigm is manifolded including modularity, manageability and extendability. This design migration should be automated as it will reduce the time…

Software Engineering · Computer Science 2018-01-04 Md. Selim , Saeed Siddik , Alim Ul Gias , M. Abdullah-Al-Wadud , Shah Mostafa Khaled

This paper introduces a natural generalization of the classical edge coloring problem in graphs that provides a useful abstraction for two well-known problems in multicast switching. We show that the problem is NP-hard and evaluate the…

Data Structures and Algorithms · Computer Science 2015-12-31 Jonathan Turner

The most commonly used method to tackle the graph partitioning problem in practice is the multilevel approach. During a coarsening phase, a multilevel graph partitioning algorithm reduces the graph size by iteratively contracting nodes and…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-03-26 Henning Meyerhenke , Peter Sanders , Christian Schulz

Graph convolutional networks (GCNs) have achieved great success in graph representation learning by extracting high-level features from nodes and their topology. Since GCNs generally follow a message-passing mechanism, each node aggregates…

Machine Learning · Computer Science 2023-09-07 Wei Duan , Junyu Xuan , Maoying Qiao , Jie Lu

Compact Genetic Algorithms (cGAs) are condensed variants of classical Genetic Algorithms (GAs) that use a probability vector representation of the population instead of the complete population. cGAs have been shown to significantly reduce…

Neural and Evolutionary Computing · Computer Science 2025-04-07 Prasanta Dutta , Anirban Mukhopadhyay

Optimization problems consist of either maximizing or minimizing an objective function. Instead of looking for a maximum solution (resp. minimum solution), one can find a minimum maximal solution (resp. maximum minimal solution). Such…

Data Structures and Algorithms · Computer Science 2018-11-08 Kaveh Khoshkhah , Mehdi Khosravian Ghadikolaei , Jerome Monnot , Florian Sikora

This paper presents an optimization technique for the multi-pass face milling process. Genetic algorithm (GA) is used to obtain the optimum cutting parameters by minimizing the unit production cost for a given amount of material removal.…

Computational Engineering, Finance, and Science · Computer Science 2009-02-05 Sourabh Saha

Graph-related applications have experienced significant growth in academia and industry, driven by the powerful representation capabilities of graph. However, efficiently executing these applications faces various challenges, such as load…

Hardware Architecture · Computer Science 2023-09-15 Zhengyang Lv , Mingyu Yan , Xin Liu , Mengyao Dong , Xiaochun Ye , Dongrui Fan , Ninghui Sun