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Cultured stem cells have become a standard platform not only for regenerative medicine and developmental biology but also for biophysical studies. Yet, the characterization of cultured stem cells at the level of morphology and macroscopic…

Soft Condensed Matter · Physics 2022-06-23 Kyogo Kawaguchi , Ryoichiro Kageyama , Masaki Sano

We present large scale computer simulations of the nonlinear bulk rheology of lamellar phases (smectic liquid crystals) at moderate to large values of the shear rate (Peclet numbers 10-100), in both two and three dimensions. In two…

Soft Condensed Matter · Physics 2012-03-15 O. Henrich , K. Stratford , D. Marenduzzo , P. V. Coveney , M. E. Cates

Confining a liquid crystal imposes topological constraints on the orientational order, allowing global control of equilibrium systems by manipulation of anchoring boundary conditions. In this article, we investigate whether a similar…

We adapt the Halperin-Mazenko formalism to analyze two-dimensional active nematics coupled to a generic fluid flow. The governing hydrodynamic equations lead to evolution laws for nematic topological defects and their corresponding density…

Soft Condensed Matter · Physics 2021-05-11 Luiza Angheluta , Zhitao Chen , M. Cristina Marchetti , Mark J. Bowick

We investigate numerically, by a hybrid lattice Boltzmann method, the morphology and the dynamics of an emulsion made of a polar active gel, contractile or extensile, and an isotropic passive fluid. We focus on the case of a highly…

Soft Condensed Matter · Physics 2019-02-28 Giuseppe Negro , Livio Nicola Carenza , Pasquale Digregorio , Giuseppe Gonnella , Antonio Lamura

We numerically study two-dimensional active nematics with periodic activity patterning. For stripes of activity, we observe a transition from two-dimensional to one-dimensional active turbulence as the maximum active force and distance…

Soft Condensed Matter · Physics 2025-03-11 Cody D. Schimming , C. J. O. Reichhardt , C. Reichhardt

A two-dimensional or quasi-two-dimensional nematic liquid crystal refers to a surface confined system. When such a system is further confined by external line boundaries or excluded from internal line boundaries, the nematic directors form…

Soft Condensed Matter · Physics 2022-04-27 Xiaomei Yao , Lei Zhang , Jeff Z. Y. Chen

Disclination lines in nematic liquid crystals can exist in different geometric conformations, characterised by their director profile. In certain confined, colloidal and even more prominently in chiral nematics, the director profile may…

Soft Condensed Matter · Physics 2015-06-12 Simon Čopar , Slobodan Žumer

We report on the emergence of stable self-propelled bound defects in monolayers of active nematics, which form virtual full-integer topological defects in the form of vortices and asters. Through numerical simulations and analytical…

Soft Condensed Matter · Physics 2020-10-26 Kristian Thijssen , Amin Doostmohammadi

We propose an agent-based model of active flexible rods. Inspired by cytoskeletal flows, we introduce activity by an internal flow that contributes to the dissipative forces. The active force between our agents is central and reciprocal,…

Soft Condensed Matter · Physics 2026-03-06 Mathieu Dedenon , Carles Blanch-Mercader , Karsten Kruse , Jens Elgeti

We introduce a two-dimensional active nematic with quenched disorder. We write the coarse-grained hydrodynamic equations of motion for slow variables, viz. density, and orientation. Disorder strength is tuned from zero to large values.…

Soft Condensed Matter · Physics 2021-07-15 Sameer Kumar , Shradha Mishra

We use analytic arguments and numerical solutions of the continuum, active nematohydrodynamic equations to study how friction alters the behaviour of active nematics. Concentrating on the case where there is nematic ordering in the passive…

Soft Condensed Matter · Physics 2024-04-23 Mehrana Raeisian Nejad , Amin Doostmohammadi , Julia Mary Yeomans

Elastic effects in a model of disordered nematic elastomers are numerically investigated in two dimensions. Networks crosslinked in the isotropic phase exhibit unusual soft mechanical response against stretching. It arises from gradual…

Soft Condensed Matter · Physics 2009-10-31 Nariya Uchida

We study the two-dimensional domain morphology of twisted nematic liquid crystals during their phase-ordering kinetics [R. A. L. Almeida, Phys. Rev. Lett. 131 (2023) 268101], which is a physical candidate to self-generate critical clusters…

Soft Condensed Matter · Physics 2025-04-30 Renan A. L. Almeida , Jeferson J. Arenzon

Morphological trends in growing colonies of living cells are at the core of physiological and evolutionary processes. Using active gel equations, which include cell division, we show that shape changes during the growth can be regulated by…

Soft Condensed Matter · Physics 2016-07-27 Amin Doostmohammadi , Sumesh P. Thampi , Julia M. Yeomans

The density of extended topological defects created during symmetry-breaking phase transitions depends on the ratio between the correlation length in the symmetric phase near $T_c$ and the winding length of the defects as determined by the…

High Energy Physics - Phenomenology · Physics 2016-08-25 G. Holzwarth

The morphology of a mixture made of a polar active gel immersed in an isotropic passive fluid is studied numerically. Lattice Boltzmann method is adopted to solve the Navier-Stokes equation and coupled to a finite-difference scheme used to…

Soft Condensed Matter · Physics 2019-11-22 Livio Nicola Carenza , Giuseppe Gonnella , Antonio Lamura , Giuseppe Negro

Disclinations, first observed in mesomorphic phases, are relevant to a number of ill-ordered condensed matter media, with continuous symmetries or frustrated order. They also appear in polycrystals at the edges of grain boundaries. They are…

Soft Condensed Matter · Physics 2009-11-13 Maurice Kleman , Jacques Friedel

We measure the defect density as a function of time at different temperatures in simulations of a two dimensional system of interacting particles. Just above the solid to liquid transition temperature, the power spectrum of the defect…

Soft Condensed Matter · Physics 2009-11-07 C. Reichhardt , C. J. Olson Reichhardt

"Active nematics" are orientationally ordered but apolar fluids composed of interacting constituents individually powered by an internal source of energy. When activity exceeds a system-size dependent threshold, spatially uniform active…

Soft Condensed Matter · Physics 2017-11-08 Richard Green , John Toner , Vincenzo Vitelli