Related papers: Grammar Boosting: A New Technique for Proving Lowe…
Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…
We propose algorithms that, given the input string of length $n$ over integer alphabet of size $\sigma$, construct the Burrows-Wheeler transform (BWT), the permuted longest-common-prefix (PLCP) array, and the LZ77 parsing in…
Sublinear time quantum algorithms have been established for many fundamental problems on strings. This work demonstrates that new, faster quantum algorithms can be designed when the string is highly compressible. We focus on two popular and…
Grammar compression is, next to Lempel-Ziv (LZ77) and run-length Burrows-Wheeler transform (RLBWT), one of the most flexible approaches to representing and processing highly compressible strings. The main idea is to represent a text as a…
Grammar-based compression is a widely-accepted model of string compression that allows for efficient and direct manipulations on the compressed data. Most, if not all, such manipulations rely on the primitive \emph{random access} queries, a…
We present an efficient algorithm for computing the LZ78 factorization of a text, where the text is represented as a straight line program (SLP), which is a context free grammar in the Chomsky normal form that generates a single string.…
Satisfiability of word equations is an important problem in the intersection of formal languages and algebra: Given two sequences consisting of letters and variables we are to decide whether there is a substitution for the variables that…
Graph compression is a data analysis technique that consists in the replacement of parts of a graph by more general structural patterns in order to reduce its description length. It notably provides interesting exploration tools for the…
Neural compression is the application of neural networks and other machine learning methods to data compression. Recent advances in statistical machine learning have opened up new possibilities for data compression, allowing compression…
The traditional methods for data compression are typically based on the symbol-level statistics, with the information source modeled as a long sequence of i.i.d. random variables or a stochastic process, thus establishing the fundamental…
Suppose that we are given a string $s$ of length $n$ over an alphabet $\{0,1,\ldots,n^{O(1)}\}$ and $\delta$ is the string complexity of $s$, a known compression measure. We describe an index on $s$ with $O(\delta\log\frac{n}{\delta})$…
The rise of repetitive datasets has lately generated a lot of interest in compressed self-indexes based on dictionary compression, a rich and heterogeneous family that exploits text repetitions in different ways. For each such compression…
Given $d$ strings over the alphabet $\{0,1,\ldots,\sigma{-}1\}$, the classical Aho--Corasick data structure allows us to find all $occ$ occurrences of the strings in any text $T$ in $O(|T| + occ)$ time using $O(m\log m)$ bits of space,…
We initiate the study of sub-linear sketching and streaming techniques for estimating the output size of common dictionary compressors such as Lempel-Ziv '77, the run-length Burrows-Wheeler transform, and grammar compression. To this end,…
Given two positions $i$ and $j$ in a string $T$ of length $N$, a longest common extension (LCE) query asks for the length of the longest common prefix between suffixes beginning at $i$ and $j$. A compressed LCE data structure is a data…
In distribution compression, one aims to accurately summarize a probability distribution $\mathbb{P}$ using a small number of representative points. Near-optimal thinning procedures achieve this goal by sampling $n$ points from a Markov…
In the era of big data, learning from categorical features with very large vocabularies (e.g., 28 million for the Criteo click prediction dataset) has become a practical challenge for machine learning researchers and practitioners. We…
To handle vast amounts of data, it is natural and popular to compress vectors and matrices. When we compress a vector from size $N$ down to size $n \ll N$, it certainly makes it easier to store and transmit efficiently, but does it also…
Tree-adjoining grammars are a generalization of context-free grammars that are well suited to model human languages and are thus popular in computational linguistics. In the tree-adjoining grammar recognition problem, given a grammar…
A $\textit{compression scheme}$ $A$ for a class $\mathbb{G}$ of graphs consists of an encoding algorithm $\textit{Encode}_A$ that computes a binary string $\textit{Code}_A(G)$ for any given graph $G$ in $\mathbb{G}$ and a decoding algorithm…