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Using different methods for laying out a graph can lead to very different visual appearances, with which the viewer perceives different information. Selecting a "good" layout method is thus important for visualizing a graph. The selection…

Social and Information Networks · Computer Science 2017-10-13 Oh-Hyun Kwon , Tarik Crnovrsanin , Kwan-Liu Ma

As the field of Topological Data Analysis continues to show success in theory and in applications, there has been increasing interest in using tools from this field with methods for machine learning. Using persistent homology, specifically…

Computational Geometry · Computer Science 2020-02-26 Sarah Tymochko , Elizabeth Munch , Firas A. Khasawneh

Graph contrastive learning (GCL) has recently emerged as a new concept which allows for capitalizing on the strengths of graph neural networks (GNNs) to learn rich representations in a wide variety of applications which involve abundant…

Machine Learning · Computer Science 2024-06-26 Yuzhou Chen , Jose Frias , Yulia R. Gel

Topological data analysis uses tools from topology -- the mathematical area that studies shapes -- to create representations of data. In particular, in persistent homology, one studies one-parameter families of spaces associated with data,…

Machine Learning · Computer Science 2020-12-01 Guido Montúfar , Nina Otter , Yuguang Wang

Persistent homology is a widely used tool in Topological Data Analysis that encodes multiscale topological information as a multi-set of points in the plane called a persistence diagram. It is difficult to apply statistical theory directly…

Statistics Theory · Mathematics 2013-12-03 Frédéric Chazal , Brittany Terese Fasy , Fabrizio Lecci , Alessandro Rinaldo , Larry Wasserman

This paper is second in the series, following Pranav et al. (2019), focused on the characterization of geometric and topological properties of 3D Gaussian random fields. We focus on the formalism of persistent homology, the mainstay of…

Cosmology and Nongalactic Astrophysics · Physics 2021-09-21 Pratyush Pranav

While the strength of Topological Data Analysis has been explored in many studies on high dimensional numeric data, it is still a challenging task to apply it to text. As the primary goal in topological data analysis is to define and…

Machine Learning · Computer Science 2020-03-31 Shafie Gholizadeh , Ketki Savle , Armin Seyeditabari , Wlodek Zadrozny

We develop a language for describing the relationship among observations, mathematical models, and the underlying principles from which they are derived. Using Information Geometry, we consider geometric properties of statistical models for…

Data Analysis, Statistics and Probability · Physics 2016-07-14 Mark K. Transtrum , Gus Hart , Peng Qiu

The Reeb space of a continuous map is the space of all (elements representing) connected components of preimages endowed with the quotient topology induced from the natural equivalence relation on the domain. These objects are strong tools…

General Topology · Mathematics 2021-06-15 Naoki Kitazawa

In this article, we study the question of the statistical convergence of the 1-dimensional Mapper to its continuous analogue, the Reeb graph. We show that the Mapper is an optimal estimator of the Reeb graph, which gives, as a byproduct, a…

Computational Geometry · Computer Science 2017-11-10 Mathieu Carrière , Bertrand Michel , Steve Oudot

Computational topology has recently known an important development toward data analysis, giving birth to the field of topological data analysis. Topological persistence, or persistent homology, appears as a fundamental tool in this field.…

Statistics Theory · Mathematics 2013-05-28 Frédéric Chazal , Marc Glisse , Catherine Labruère , Bertrand Michel

In topological data analysis, persistent homology is used to study the "shape of data". Persistent homology computations are completely characterized by a set of intervals called a bar code. It is often said that the long intervals…

Computational Geometry · Computer Science 2025-02-19 Peter Bubenik , Michael Hull , Dhruv Patel , Benjamin Whittle

Topological Machine Learning (TML) is an emerging field that leverages techniques from algebraic topology to analyze complex data structures in ways that traditional machine learning methods may not capture. This tutorial provides a…

Machine Learning · Computer Science 2024-09-05 Baris Coskunuzer , Cüneyt Gürcan Akçora

In artificial-intelligence-aided signal processing, existing deep learning models often exhibit a black-box structure, and their validity and comprehensibility remain elusive. The integration of topological methods, despite its relatively…

Machine Learning · Computer Science 2023-11-28 Pingyao Feng , Siheng Yi , Qingrui Qu , Zhiwang Yu , Yifei Zhu

Persistent homology (PH) has been widely applied to graph data to extract topological features. However, little attention has been paid to how different distance functions on a graph affect the resulting persistence barcodes and their…

Algebraic Topology · Mathematics 2026-02-17 Eunwoo Heo , Byeongchan Choi , Jae-Hun Jung

Data analysis often concerns not only the space where data come from, but also various types of maps attached to data. In recent years, several related structures have been used to study maps on data, including Reeb spaces, mappers and…

Computational Geometry · Computer Science 2017-03-23 Tamal K. Dey , Facundo Memoli , Yusu Wang

Distance measures play an important role in shape classification and data analysis problems. Topological distances based on Reeb graphs and persistence diagrams have been employed to obtain effective algorithms in shape matching and scalar…

Machine Learning · Computer Science 2023-03-07 Yashwanth Ramamurthi , Amit Chattopadhyay

The study of irreducible higher-order interactions has become a core topic of study in complex systems. Two of the most well-developed frameworks, topological data analysis and multivariate information theory, aim to provide formal tools…

Information Theory · Computer Science 2025-04-15 Thomas F. Varley , Pedro A. M. Mediano , Alice Patania , Josh Bongard

Neural networks encode inputs as high-dimensional vectors, known as representations, that capture how models process data by encoding task-relevant structure and semantics. Representation alignment refers to the degree to which different…

Computational Geometry · Computer Science 2026-05-26 Xinyuan Yan , Rita Sevastjanova , Mennatallah El-Assady , Bei Wang

In this paper, we exploit minimal sensing information gathered from biologically inspired sensor networks to perform exploration and mapping in an unknown environment. A probabilistic motion model of mobile sensing nodes, inspired by motion…

Robotics · Computer Science 2014-10-20 Alireza Dirafzoon , Edgar Lobaton
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