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Related papers: PG-Triggers: Triggers for Property Graphs

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Benchmark data sets are an indispensable ingredient of the evaluation of graph-based machine learning methods. We release a new data set, compiled from International Planning Competitions (IPC), for benchmarking graph classification,…

Machine Learning · Computer Science 2019-05-17 Patrick Ferber , Tengfei Ma , Siyu Huo , Jie Chen , Michael Katz

Graph database query languages cannot express algorithms like PageRank, forcing costly data wrangling, while existing solutions such as algorithm libraries, vertex-centric APIs, and recursive CTEs lack the necessary combination of…

This paper describes a novel Python package, named causalgraph, for modeling and saving causal graphs embedded in knowledge graphs. The package has been designed to provide an interface between causal disciplines such as causal discovery…

Artificial Intelligence · Computer Science 2023-01-23 Sven Pieper , Carl Willy Mehling , Dominik Hirsch , Tobias Lüke , Steffen Ihlenfeldt

Graph theory and graph mining constitute rich fields of computational techniques to study the structures, topologies and properties of graphs. These techniques constitute a good asset in bioinformatics if there exist efficient methods for…

Biomolecules · Quantitative Biology 2016-04-04 Wajdi Dhifli , Abdoulaye Baniré Diallo

Networks or graphs are widely used across the sciences to represent relationships of many kinds. igraph (https://igraph.org) is a general-purpose software library for graph construction, analysis, and visualisation, combining fast and…

Retrieval-Augmented Generation (RAG) based on knowledge graphs (KGs) enhances large language models (LLMs) by providing structured and interpretable external knowledge. However, existing KG-based RAG methods struggle to retrieve accurate…

Artificial Intelligence · Computer Science 2025-10-21 Junchi Yu , Yujie Liu , Jindong Gu , Philip Torr , Dongzhan Zhou

Recently, much exertion has been paid to design graph self-supervised methods to obtain generalized pre-trained models, and adapt pre-trained models onto downstream tasks through fine-tuning. However, there exists an inherent gap between…

Machine Learning · Computer Science 2023-08-16 Yun Zhu , Jianhao Guo , Siliang Tang

We consider a core language of graph queries. These queries are seen as formulas to be solved with respect to graph-oriented databases. For this purpose, we first define a graph query algebra where some operations over graphs and sets of…

Logic in Computer Science · Computer Science 2022-02-22 Dominique Duval , Rachid Echahed , Frederic Prost

Designing accurate deep learning models for molecular property prediction plays an increasingly essential role in drug and material discovery. Recently, due to the scarcity of labeled molecules, self-supervised learning methods for learning…

Biomolecules · Quantitative Biology 2022-06-08 Han Li , Dan Zhao , Jianyang Zeng

Advancing trustworthy AI requires principled software engineering approaches to model evaluation. Graph Neural Networks (GNNs) have achieved remarkable success in processing graph-structured data, however, their expressiveness in capturing…

Machine Learning · Computer Science 2026-03-03 Sicong Che , Jiayi Yang , Sarfraz Khurshid , Wenxi Wang

The prediction of molecular properties is a crucial task in the field of material and drug discovery. The potential benefits of using deep learning techniques are reflected in the wealth of recent literature. Still, these techniques are…

Machine Learning · Computer Science 2023-09-06 Minghao Guo , Veronika Thost , Samuel W Song , Adithya Balachandran , Payel Das , Jie Chen , Wojciech Matusik

Foundation models have emerged as critical components in a variety of artificial intelligence applications, and showcase significant success in natural language processing and several other domains. Meanwhile, the field of graph machine…

Machine Learning · Computer Science 2025-03-11 Jiawei Liu , Cheng Yang , Zhiyuan Lu , Junze Chen , Yibo Li , Mengmei Zhang , Ting Bai , Yuan Fang , Lichao Sun , Philip S. Yu , Chuan Shi

In the last few decades, Database Management Systems (DBMSs) became powerful tools for storing large amount of data and executing complex queries over them. In the recent years, the growing amount of unstructured or semi-structured data has…

Social and Information Networks · Computer Science 2022-10-31 Andi Ferhati

Graphs with abundant attributes are essential in modeling interconnected entities and enhancing predictions across various real-world applications. Traditional Graph Neural Networks (GNNs) often require re-training for different graph tasks…

Computation and Language · Computer Science 2026-05-26 Yanchao Tan , Hang Lv , Pengxiang Zhan , Shiping Wang , Carl Yang

In this paper, we propose PLACE (Prompt Learning for Attributed Community Search), an innovative graph prompt learning framework for ACS. Enlightened by prompt-tuning in Natural Language Processing (NLP), where learnable prompt tokens are…

Information Retrieval · Computer Science 2026-05-25 Shuheng Fang , Kangfei Zhao , Rener Zhang , Yu Rong , Jeffrey Xu Yu

As large language models (LLMs) evolve, their ability to deliver personalized and context-aware responses offers transformative potential for improving user experiences. Existing personalization approaches, however, often rely solely on…

Graph-structured data appears frequently in domains including chemistry, natural language semantics, social networks, and knowledge bases. In this work, we study feature learning techniques for graph-structured inputs. Our starting point is…

Machine Learning · Computer Science 2017-09-26 Yujia Li , Daniel Tarlow , Marc Brockschmidt , Richard Zemel

Graph-structured data arise naturally in many different application domains. By representing data as graphs, we can capture entities (i.e., nodes) as well as their relationships (i.e., edges) with each other. Many useful insights can be…

Artificial Intelligence · Computer Science 2018-07-24 John Boaz Lee , Ryan A. Rossi , Sungchul Kim , Nesreen K. Ahmed , Eunyee Koh

The paper presents a study on using language models to automate the construction of executable Knowledge Graph (KG) for compliance. The paper focuses on Abu Dhabi Global Market regulations and taxonomy, involves manual tagging a portion of…

Artificial Intelligence · Computer Science 2023-02-06 Vladimir Ershov

Graph neural networks (GNNs) have attracted much attention due to their ability to leverage the intrinsic geometries of the underlying data. Although many different types of GNN models have been developed, with many benchmarking procedures…

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