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The proliferation of open-source scientific software for science and research presents opportunities and challenges. In this paper, we introduce the SciCat dataset -- a comprehensive collection of Free-Libre Open Source Software (FLOSS)…

Software Engineering · Computer Science 2023-12-12 Addi Malviya-Thakur , Reed Milewicz , Lavinia Paganini , Ahmed Samir Imam Mahmoud , Audris Mockus

The problem that the same information need can be expressed in a variety of ways is especially true for scientific literature. Each scientific discipline has its own domain-specific language and vocabulary. This language is coded into…

Digital Libraries · Computer Science 2012-03-27 Philipp Schaer , Thomas Lüke , Wilko van Hoek

Upgrades to advanced scientific user facilities such as next-generation x-ray light sources, nanoscience centers, and neutron facilities are revolutionizing our understanding of materials across the spectrum of the physical sciences, from…

Computational Engineering, Finance, and Science · Computer Science 2023-12-05 Michael H. Prince , Henry Chan , Aikaterini Vriza , Tao Zhou , Varuni K. Sastry , Matthew T. Dearing , Ross J. Harder , Rama K. Vasudevan , Mathew J. Cherukara

This paper introduces an explanation framework designed to enhance the quality of rules in knowledge-based reasoning systems based on dataset-driven insights. The traditional method for rule induction from data typically requires…

Artificial Intelligence · Computer Science 2025-02-04 Oshani Seneviratne , Brendan Capuzzo , William Van Woensel

The reuse of research software is central to research efficiency and academic exchange. The application of software enables researchers with varied backgrounds to reproduce, validate, and expand upon study findings. Furthermore, the…

Biomedical research results are being published at a high rate, and with existing search engines, the vast amount of published work is usually easily accessible. However, reproducing published results, either experimental data or…

Molecular Networks · Quantitative Biology 2017-06-19 Kai-Wen Liang , Qinsi Wang , Cheryl Telmer , Divyaa Ravichandran , Peter Spirtes , Natasa Miskov-Zivanov

Research collaborations are continuously emerging catalyzed by online platforms, where people can share their codes, calculations, data and results. These virtual research platforms are innovative, community oriented, flexible and secure as…

Replication crises have shaken the scientific landscape during the last decade. As potential solutions, open science practices were heavily discussed and have been implemented with varying success in different disciplines. We argue that…

Computers and Society · Computer Science 2023-10-05 David Schoch , Chung-hong Chan , Claudia Wagner , Arnim Bleier

We describe a method and new no-code software tools enabling domain experts to build custom structured, labeled datasets from the unstructured text of documents and build niche machine learning text classification models traceable to…

Computation and Language · Computer Science 2023-01-23 Stephen Meisenbacher , Peter Norlander

Linked Open Datasets about scholarly publications enable the development and integration of sophisticated end-user services; however, richer datasets are still needed. The first goal of this Challenge was to investigate novel approaches to…

Digital Libraries · Computer Science 2014-08-22 Christoph Lange , Angelo Di Iorio

Complexity science offers a wide range of measures for quantifying unpredictability, structure, and information. Yet, a systematic conceptual organization of these measures is still missing. We present a unified framework that locates…

Machine Learning · Computer Science 2025-05-13 Nima Dehghani

Identifying suitable datasets for a research question remains challenging because existing dataset search engines rely heavily on metadata quality and keyword overlap, which often fail to capture the semantic intent of scientific…

Digital Libraries · Computer Science 2026-01-09 Zhiyin Tan , Changxu Duan

Improving data quality in unstructured documents is a long-standing challenge. Unstructured data, especially in textual form, inherently lacks defined semantics, which poses significant challenges for effective processing and for ensuring…

Databases · Computer Science 2025-02-26 Besat Kassaie , Frank Wm. Tompa

Cloud computing provides a great opportunity for scientists, as it enables large-scale experiments that cannot are too long to run on local desktop machines. Cloud-based computations can be highly parallel, long running and data-intensive,…

Software Engineering · Computer Science 2016-12-07 Maria Spichkova , Heinz W. Schmidt , Ian E. Thomas , Iman I. Yusuf , Steve Androulakis , Grischa R. Meyer

As Large Language Models (LLMs) become ubiquitous across various scientific domains, their lack of ability to perform complex tasks like running simulations or to make complex decisions limits their utility. LLM-based agents bridge this gap…

Computation and Language · Computer Science 2026-01-21 Anurag Acharya , Timothy Vega , Rizwan A. Ashraf , Anshu Sharma , Derek Parker , Robert Rallo

It is essential for the advancement of science that scientists and researchers share, reuse and reproduce workflows and protocols used by others. The FAIR principles are a set of guidelines that aim to maximize the value and usefulness of…

Machine Learning · Computer Science 2019-11-22 Remzi Celebi , Joao Rebelo Moreira , Ahmed A. Hassan , Sandeep Ayyar , Lars Ridder , Tobias Kuhn , Michel Dumontier

An end-to-end platform for chemical science research has been developed that integrates data from computational and experimental approaches through a modern web-based interface. The platform offers a highly interactive visualization and…

Software Engineering · Computer Science 2017-07-17 Marcus D. Hanwell , Wibe A. de Jong , Christopher J. Harris

Scientific problem-solving involves synthesizing information while applying expert knowledge. We introduce CURIE, a scientific long-Context Understanding,Reasoning and Information Extraction benchmark to measure the potential of Large…

With ever-increasing computational capabilities, robust and automated research workflows have become essential for orchestrating large numbers of interdependent simulations. However, significant technical expertise is still required to…

Reproducibility, traceability, and transparency in testing cyber-physical energy systems are crucial for scientific advancement and cross-laboratory collaboration. Current experimentation and test documentation practices lack formal…

Systems and Control · Electrical Eng. & Systems 2026-04-22 Kai Heussen , Jawad Kazmi , Narges Mehran , Artjoms Obushevs , Terence O'Donnell , Thomas I. Strasser
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