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Machine learning (ML) can be used to construct surrogate models for the fast prediction of a property of interest. ML can thus be applied to chemical projects, where the usual experimentation or calculation techniques can take hours or days…

Multi-label classification (MLC) is the task of assigning a set of target labels for a given sample. Modeling the combinatorial label interactions in MLC has been a long-haul challenge. We propose Label Message Passing (LaMP) Neural…

Machine Learning · Computer Science 2019-04-18 Jack Lanchantin , Arshdeep Sekhon , Yanjun Qi

Recently, machine learning, particularly message-passing graph neural networks (MPNNs), has gained traction in enhancing exact optimization algorithms. For example, MPNNs speed up solving mixed-integer optimization problems by imitating…

Machine Learning · Computer Science 2023-10-17 Chendi Qian , Didier Chételat , Christopher Morris

Graph neural networks (GNNs) have become an indispensable tool for analyzing relational data. Classical GNNs are broadly classified into three variants: convolutional, attentional, and message-passing. While the standard message-passing…

Machine Learning · Computer Science 2026-01-09 Brian Godwin Lim , Galvin Brice Lim , Renzo Roel Tan , Irwin King , Kazushi Ikeda

Message passing plays a vital role in graph neural networks (GNNs) for effective feature learning. However, the over-reliance on input topology diminishes the efficacy of message passing and restricts the ability of GNNs. Despite efforts to…

Machine Learning · Computer Science 2024-12-03 Junshu Sun , Chenxue Yang , Xiangyang Ji , Qingming Huang , Shuhui Wang

Graph neural networks (GNNs) are commonly divided into message-passing neural networks (MPNNs) and spectral graph neural networks, reflecting two largely separate research traditions in machine learning and signal processing. This paper…

Graph neural networks (GNNs), which are capable of learning representations from graphical data, are naturally suitable for modeling molecular systems. This review introduces GNNs and their various applications for small organic molecules.…

Machine Learning · Computer Science 2023-10-10 Yuyang Wang , Zijie Li , Amir Barati Farimani

The Topological Signal Processing (TSP) framework has been recently developed to analyze signals defined over simplicial complexes, i.e. topological spaces represented by finite sets of elements that are closed under inclusion of subsets…

Signal Processing · Electrical Eng. & Systems 2021-12-14 Stefania Sardellitti , Sergio Barbarossa , Lucia Testa

We show that a message-passing process allows to store in binary "material" synapses a number of random patterns which almost saturates the information theoretic bounds. We apply the learning algorithm to networks characterized by a wide…

Disordered Systems and Neural Networks · Physics 2009-11-11 Alfredo Braunstein , Riccardo Zecchina

Molecular Property Prediction (MPP) task involves predicting biochemical properties based on molecular features, such as molecular graph structures, contributing to the discovery of lead compounds in drug development. To address data…

Machine Learning · Computer Science 2023-12-07 Xu Yao , Shuang Liang , Songqiao Han , Hailiang Huang

Graph Neural Networks (GNNs) are key tools for graph representation learning, demonstrating strong results across diverse prediction tasks. In this paper, we present Convexified Message-Passing Graph Neural Networks (CGNNs), a novel and…

Machine Learning · Computer Science 2026-01-27 Saar Cohen , Noa Agmon , Uri Shaham

Hypergraphs are crucial for modelling higher-order interactions in real-world data. Hypergraph neural networks (HNNs) effectively utilise these structures by message passing to generate informative node features for various downstream tasks…

Machine Learning · Computer Science 2025-03-12 Bohan Tang , Zexi Liu , Keyue Jiang , Siheng Chen , Xiaowen Dong

Real-world graphs exhibit increasing heterophily, where nodes no longer tend to be connected to nodes with the same label, challenging the homophily assumption of classical graph neural networks (GNNs) and impeding their performance.…

Machine Learning · Computer Science 2024-08-22 Jiajun Zhou , Chenxuan Xie , Shengbo Gong , Jiaxu Qian , Shanqing Yu , Qi Xuan , Xiaoniu Yang

Message-Passing Neural Networks (MPNNs) have become a cornerstone for processing and analyzing graph-structured data. However, their effectiveness is often hindered by phenomena such as over-squashing, where long-range dependencies or…

Machine Learning · Computer Science 2025-05-30 Shahaf E. Finder , Ron Shapira Weber , Moshe Eliasof , Oren Freifeld , Eran Treister

Conventional approaches to learning on graphs involve message passing along existing (i.e., positive) edges to update node features. However, these approaches often disregard the potentially valuable information contained in the absence…

Machine Learning · Computer Science 2026-05-19 Peter Pao-Huang , Charilaos I. Kanatsoulis , Michael Bereket , Jure Leskovec

In the field of chemistry, the objective is to create novel molecules with desired properties, facilitating accurate property predictions for applications such as material design and drug screening. However, existing graph deep learning…

Machine Learning · Computer Science 2024-08-28 Sakhinana Sagar Srinivas , Venkataramana Runkana

Graph neural network (GNN) and label propagation algorithm (LPA) are both message passing algorithms, which have achieved superior performance in semi-supervised classification. GNN performs feature propagation by a neural network to make…

Machine Learning · Computer Science 2021-05-12 Yunsheng Shi , Zhengjie Huang , Shikun Feng , Hui Zhong , Wenjin Wang , Yu Sun

Graph neural networks (GNNs) have achieved champion in wide applications. Neural message passing is a typical key module for feature propagation by aggregating neighboring features. In this work, we propose a new message passing based on…

Machine Learning · Computer Science 2023-03-01 Xinliang Liu , Bingxin Zhou , Chutian Zhang , Yu Guang Wang

Graph Neural Networks (GNNs) are eminently suitable for wireless resource management, thanks to their scalability, but they still face computational challenges in large-scale, dense networks in classical computers. The integration of…

Information Theory · Computer Science 2026-01-27 Le Tung Giang , Nguyen Xuan Tung , Trinh Van Chien , Lajos Hanzo , Won-Joo Hwang

Graphical models use the intuitive and well-studied methods of graph theory to implicitly represent dependencies between variables in large systems. They can model the global behaviour of a complex system by specifying only local factors.…

Artificial Intelligence · Computer Science 2015-08-21 Siamak Ravanbakhsh