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Phenotype-driven gene prioritization is a critical process in the diagnosis of rare genetic disorders for identifying and ranking potential disease-causing genes based on observed physical traits or phenotypes. While traditional approaches…

Quantitative Methods · Quantitative Biology 2024-04-04 Junyoung Kim , Jingye Yang , Kai Wang , Chunhua Weng , Cong Liu

Despite their unprecedented success, even the largest language models make mistakes. Similar to how humans learn and improve using feedback, previous work proposed providing language models with natural language feedback to guide them in…

Computation and Language · Computer Science 2023-07-13 Afra Feyza Akyürek , Ekin Akyürek , Aman Madaan , Ashwin Kalyan , Peter Clark , Derry Wijaya , Niket Tandon

The dream of achieving a student-teacher ratio of 1:1 is closer than ever thanks to the emergence of large language models (LLMs). One potential application of these models in the educational field would be to provide feedback to students…

Computers and Society · Computer Science 2025-05-06 Marc Ballestero-Ribó , Daniel Ortiz-Martínez

Large Language Models, particularly decoder-only generative models such as GPT, are increasingly used to automate Software Engineering tasks. These models are primarily guided through natural language prompts, making prompt engineering a…

Software Engineering · Computer Science 2026-01-06 Alexander Korn , Lea Zaruchas , Chetan Arora , Andreas Metzger , Sven Smolka , Fanyu Wang , Andreas Vogelsang

Large Language Models (LLMs) are increasingly used by software engineers for code generation. However, limitations of LLMs such as irrelevant or incorrect code have highlighted the need for prompt programming (or prompt engineering) where…

Software Engineering · Computer Science 2025-07-09 Ranim Khojah , Francisco Gomes de Oliveira Neto , Mazen Mohamad , Philipp Leitner

Making errors is part of the programming process -- even for the most seasoned professionals. Novices in particular are bound to make many errors while learning. It is well known that traditional (compiler/interpreter) programming error…

Software Engineering · Computer Science 2025-01-13 Audrey Salmon , Katie Hammer , Eddie Antonio Santos , Brett A. Becker

Large language models (LLMs) have become increasingly capable of following instructions and complex reasoning, making prompting a flexible interface for adapting models without parameter updates. Yet prompt design remains labor-intensive…

Computation and Language · Computer Science 2026-05-22 Farima Fatahi Bayat , Moin Aminnaseri , Pouya Pezeshkpour , Estevam Hruschka

Large Language Models (LLMs) are nowadays extensively used for various types of software engineering tasks, primarily code generation. Previous research has shown how suitable prompt engineering could help developers in improving their code…

Previous learning-based vulnerability detection methods relied on either medium-sized pre-trained models or smaller neural networks from scratch. Recent advancements in Large Pre-Trained Language Models (LLMs) have showcased remarkable…

Software Engineering · Computer Science 2024-01-30 Xin Zhou , Ting Zhang , David Lo

Large Language Models (LLMs) have the potential to revolutionize automated traceability by overcoming the challenges faced by previous methods and introducing new possibilities. However, the optimal utilization of LLMs for automated…

Software Engineering · Computer Science 2023-08-02 Alberto D. Rodriguez , Katherine R. Dearstyne , Jane Cleland-Huang

Large language models (LLMs) have become proficient at sophisticated code-generation tasks, yet remain ineffective at reliably detecting or avoiding code vulnerabilities. Does this deficiency stem from insufficient learning about code…

Cryptography and Security · Computer Science 2025-07-15 Weichen Yu , Ravi Mangal , Terry Zhuo , Matt Fredrikson , Corina S. Pasareanu

Prompt engineering is a challenging and important task due to the high sensitivity of Large Language Models (LLMs) to the given prompt and the inherent ambiguity of a textual task instruction. Automatic prompt engineering is essential to…

Computation and Language · Computer Science 2024-02-06 Elad Levi , Eli Brosh , Matan Friedmann

Entity matching is the task of deciding whether two entity descriptions refer to the same real-world entity. Entity matching is a central step in most data integration pipelines. Many state-of-the-art entity matching methods rely on…

Computation and Language · Computer Science 2024-10-21 Ralph Peeters , Aaron Steiner , Christian Bizer

Large LMs such as GPT-3 are powerful, but can commit mistakes that are obvious to humans. For example, GPT-3 would mistakenly interpret "What word is similar to good?" to mean a homophone, while the user intended a synonym. Our goal is to…

Computation and Language · Computer Science 2023-02-21 Aman Madaan , Niket Tandon , Peter Clark , Yiming Yang

Automatic code generation has gained significant momentum with the advent of Large Language Models (LLMs) such as GPT-4. Although many studies focus on improving the effectiveness of LLMs for code generation, very limited work tries to…

Software Engineering · Computer Science 2025-06-02 Melika Sepidband , Hamed Taherkhani , Song Wang , Hadi Hemmati

Prior work has shown that finetuning large language models (LLMs) using machine-generated instruction-following data enables such models to achieve remarkable zero-shot capabilities on new tasks, and no human-written instructions are…

Computation and Language · Computer Science 2023-04-07 Baolin Peng , Chunyuan Li , Pengcheng He , Michel Galley , Jianfeng Gao

Empirical software engineering research on production systems has brought forth a better understanding of the software engineering process for practitioners and researchers alike. However, only a small subset of production systems is…

Software Engineering · Computer Science 2024-06-21 Jenny T. Liang , Carmen Badea , Christian Bird , Robert DeLine , Denae Ford , Nicole Forsgren , Thomas Zimmermann

Large Language Models (LLMs) can aid synthesis planning in chemistry, but standard prompting methods often yield hallucinated or outdated suggestions. We study LLM interactions with a reaction knowledge graph by casting reaction path…

Artificial Intelligence · Computer Science 2026-01-23 Olga Bunkova , Lorenzo Di Fruscia , Sophia Rupprecht , Artur M. Schweidtmann , Marcel J. T. Reinders , Jana M. Weber

Multilingual Large Language Models (LLMs) have demonstrated exceptional performance in Machine Translation (MT) tasks. However, their MT abilities in the context of code-switching (the practice of mixing two or more languages in an…

Computation and Language · Computer Science 2024-10-16 Ayushman Gupta , Akhil Bhogal , Kripabandhu Ghosh

Large Language Models (LLMs) excel in various Natural Language Processing (NLP) tasks, yet their evaluation, particularly in languages beyond the top $20$, remains inadequate due to existing benchmarks and metrics limitations. Employing…

Computation and Language · Computer Science 2024-02-14 Rishav Hada , Varun Gumma , Adrian de Wynter , Harshita Diddee , Mohamed Ahmed , Monojit Choudhury , Kalika Bali , Sunayana Sitaram
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