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Here we introduce simple structures for the analysis of complex hypergraphs, hypergraph animals. These structures are designed to describe the local node neighbourhoods of nodes in hypergraphs. We establish their relationships to lattice…

Molecular Networks · Quantitative Biology 2024-07-08 Michael P. H. Stumpf

We introduce a spatial graph and hypergraph model that smoothly interpolates between a graph with purely pairwise edges and a graph where all connections are in large hyperedges. The key component is a spatial clustering resolution…

Social and Information Networks · Computer Science 2025-04-10 Omar Eldaghar , Yu Zhu , David F. Gleich

Graphs (i.e., networks) have become an integral tool for the representation and analysis of relational data. Advances in data gathering have lead to multi-relational data sets which exhibit greater depth and scope. In certain cases, this…

Combinatorics · Mathematics 2022-01-31 Gregory J. Clark , Felipe Thomaz , Andrew Stephen

A hypergraph is a data structure composed of nodes and hyperedges, where each hyperedge is an any-sized subset of nodes. Due to the flexibility in hyperedge size, hypergraphs represent group interactions (e.g., co-authorship by more than…

Social and Information Networks · Computer Science 2023-06-06 Minyoung Choe , Sunwoo Kim , Jaemin Yoo , Kijung Shin

From social networks to protein complexes to disease genomes to visual data, hypergraphs are everywhere. However, the scope of research studying deep learning on hypergraphs is still quite sparse and nascent, as there has not yet existed an…

Machine Learning · Computer Science 2019-10-08 Josh Payne

In recent decades, it has been emphasized that the evolving structure of networks may be shaped by interaction principles that yield sparse graphs with a vertex degree distribution exhibiting an algebraic tail, and other structural traits…

Statistical Mechanics · Physics 2025-07-01 Dario Borrelli

We develop random graph models where graphs are generated by connecting not only pairs of vertices by edges but also larger subsets of vertices by copies of small atomic subgraphs of arbitrary topology. This allows the for the generation of…

Statistics Theory · Mathematics 2021-04-21 Anatol E. Wegner , Sofia Olhede

Hypergraphs naturally represent group interactions, which are omnipresent in many domains: collaborations of researchers, co-purchases of items, and joint interactions of proteins, to name a few. In this work, we propose tools for answering…

Social and Information Networks · Computer Science 2023-10-25 Geon Lee , Seokbum Yoon , Jihoon Ko , Hyunju Kim , Kijung Shin

Many networked datasets with units interacting in groups of two or more, encoded with hypergraphs, are accompanied by extra information about nodes, such as the role of an individual in a workplace. Here we show how these node attributes…

Social and Information Networks · Computer Science 2024-10-31 Anna Badalyan , Nicolò Ruggeri , Caterina De Bacco

Disease spreading models such as the ubiquitous SIS compartmental model and its numerous variants are widely used to understand and predict the behaviour of a given epidemic or information diffusion process. A common approach to imbue more…

Dynamical Systems · Mathematics 2025-11-18 Eugene Tan , Michael Small , Shannon D. Algar

People organize in groups and contagions spread across them. A simple stochastic process, yet complex to model due to dynamical correlations within and between groups. Moreover, groups can evolve if agents join or leave in response to…

Physics and Society · Physics 2025-05-22 Giulio Burgio , Guillaume St-Onge , Laurent Hébert-Dufresne

Weighted networks capture the structure of complex systems where interaction strength is meaningful. This information is essential to a large number of processes, such as threshold dynamics, where link weights reflect the amount of…

Physics and Society · Physics 2021-04-28 Samuel Unicomb , Gerardo Iñiguez , Márton Karsai

A hypergraph is a generalization of a graph, in which a hyperedge can connect multiple vertices, modeling complex relationships involving multiple vertices simultaneously. Hypergraph pattern matching, which is to find all isomorphic…

Databases · Computer Science 2025-12-23 Siwoo Song , Wonseok Shin , Kunsoo Park , Giuseppe F. Italiano , Zhengyi Yang , Wenjie Zhang

Networks are important structures used to model complex systems where interactions take place. In a basic network model, entities are represented as nodes, and interaction and relations among them are represented as edges. However, in a…

Social and Information Networks · Computer Science 2021-02-18 Mehmet Emin Aktas , Esra Akbas

The emergence of collective behaviors in networks of dynamical units in pairwise interaction has been explained as the effect of diffusive coupling. How does the presence of higher-order interaction impact the onset of spontaneous or…

Adaptation and Self-Organizing Systems · Physics 2023-10-05 Fabio Della Rossa , Davide Liuzza , Francesco Lo Iudice , Pietro De Lellis

Graphs are ubiquitous data structures for representing interactions between entities. With an emphasis on the use of graphs to represent chemical molecules, we explore the task of learning to generate graphs that conform to a distribution…

Machine Learning · Computer Science 2019-03-08 Qi Liu , Miltiadis Allamanis , Marc Brockschmidt , Alexander L. Gaunt

Statistical analysis of a graph often starts with embedding, the process of representing its nodes as points in space. How to choose the embedding dimension is a nuanced decision in practice, but in theory a notion of true dimension is…

Machine Learning · Statistics 2021-01-06 Patrick Rubin-Delanchy

Hypergraphs, which use hyperedges to capture groupwise interactions among different entities, have gained increasing attention recently for their versatility in effectively modeling real-world networks. In this paper, we study the problem…

Data Structures and Algorithms · Computer Science 2025-04-04 Haozhe Yin , Kai Wang , Wenjie Zhang , Ying Zhang , Ruijia Wu , Xuemin Lin

We study hypergraph visualization via its topological simplification. We explore both vertex simplification and hyperedge simplification of hypergraphs using tools from topological data analysis. In particular, we transform a hypergraph to…

Human-Computer Interaction · Computer Science 2021-04-23 Youjia Zhou , Archit Rathore , Emilie Purvine , Bei Wang

In this survey, we have attempted to show some developmental milestones on the characterizations of intersection graphs of hypergraphs. The theory of intersection graphs of hypergraphs has been a classical topic in the theory of special…

Combinatorics · Mathematics 2025-07-02 Ranjan N. Naik