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Analyses of targeted genomic sequencing data from next-generation-sequencing (NGS) technologies typically involves mapping reads to a reference sequence or clustering reads. For a number of species a reference genome is not available so the…

Genomics · Quantitative Biology 2016-02-16 Raunaq Malhotra , Daniel Elleder , Le Bao , David R Hunter , Raj Acharya , Mary Poss

We investigate the onset of the discontinuous percolation transition in small-world hyperbolic networks by studying the systems-size scaling of the typical largest cluster approaching the transition, $p\nearrow p_{c}$. To this end, we…

Statistical Mechanics · Physics 2014-08-01 Vijay Singh , Stefan Boettcher

We develop a theoretical approach to percolation in random clustered networks. We find that, although clustering in scale-free networks can strongly affect some percolation properties, such as the size and the resilience of the giant…

Disordered Systems and Neural Networks · Physics 2009-11-11 M. Angeles Serrano , Marian Boguna

Clustering, or grouping, dataset elements based on similarity can be used not only to classify a dataset into a few categories, but also to approximate it by a relatively large number of representative elements. In the latter scenario,…

Machine Learning · Computer Science 2019-09-13 Tim Jaschek , Marko Bucyk , Jaspreet S. Oberoi

Producing overlapping schemes is a major issue in clustering. Recent proposed overlapping methods relies on the search of an optimal covering and are based on different metrics, such as Euclidean distance and I-Divergence, used to measure…

Machine Learning · Statistics 2012-11-30 Chiheb-Eddine Ben N'Cir , Nadia Essoussi , Patrice Bertrand

Analytical results are derived for the bond percolation threshold and the size of the giant connected component in a class of random networks with non-zero clustering. The network's degree distribution and clustering spectrum may be…

Statistical Mechanics · Physics 2009-09-22 James P. Gleeson

We test the universal finite-size scaling of the cluster mass order parameter in two-dimensional (2D) isotropic and directed continuum percolation models below the percolation threshold by computer simulations. We found that the simulation…

Condensed Matter · Physics 2015-06-25 Van Lien Nguyen , Enrique Canessa

Spectral clustering is a powerful technique for clustering high-dimensional data, utilizing graph-based representations to detect complex, non-linear structures and non-convex clusters. The construction of a similarity graph is essential…

Machine Learning · Computer Science 2025-01-27 Kamal Berahmand , Farid Saberi-Movahed , Razieh Sheikhpour , Yuefeng Li , Mahdi Jalili

We propose a novel end-to-end neural network architecture that, once trained, directly outputs a probabilistic clustering of a batch of input examples in one pass. It estimates a distribution over the number of clusters $k$, and for each $1…

Machine Learning · Computer Science 2018-07-12 Benjamin Bruno Meier , Ismail Elezi , Mohammadreza Amirian , Oliver Durr , Thilo Stadelmann

We consider a generalized version of the correlation clustering problem, defined as follows. Given a complete graph $G$ whose edges are labeled with $+$ or $-$, we wish to partition the graph into clusters while trying to avoid errors: $+$…

Data Structures and Algorithms · Computer Science 2016-05-25 Gregory J. Puleo , Olgica Milenkovic

We consider a stationary random field indexed by an increasing sequence of subsets of $\mathbb{Z}^d$ obeying a very broad geometrical assumption on how the sequence expands. Under certain mixing and local conditions, we show how the tail…

Probability · Mathematics 2022-01-19 Anders Rønn-Nielsen , Mads Stehr

There are many cluster analysis methods that can produce quite different clusterings on the same dataset. Cluster validation is about the evaluation of the quality of a clustering; "relative cluster validation" is about using such criteria…

Methodology · Statistics 2020-09-10 Christian Hennig

Graph clustering is a fundamental problem that has been extensively studied both in theory and practice. The problem has been defined in several ways in literature and most of them have been proven to be NP-Hard. Due to their high practical…

Social and Information Networks · Computer Science 2012-03-27 Sumit Singh

Local constraint is closely related to the gauge field, so constrained models are usually effective low energy descriptions and important in condensed matter physics. On the other hand, local restriction hinders the application of numerical…

Statistical Mechanics · Physics 2022-10-11 Zheng Yan

Clustering is the propensity of nodes that share a common neighbour to be connected. It is ubiquitous in many networks but poses many modelling challenges. Clustering typically manifests itself by a higher than expected frequency of…

Dynamical Systems · Mathematics 2016-01-07 Martin Ritchie , Luc Berthouze , Istvan Z. Kiss

Clustering is a central approach for unsupervised learning. After clustering is applied, the most fundamental analysis is to quantitatively compare clusterings. Such comparisons are crucial for the evaluation of clustering methods as well…

Machine Learning · Statistics 2017-10-03 Alexander J Gates , Yong-Yeol Ahn

Text Clustering is a text mining technique which divides the given set of text documents into significant clusters. It is used for organizing a huge number of text documents into a well-organized form. In the majority of the clustering…

Information Retrieval · Computer Science 2015-03-12 G. Hannah Grace , Kalyani Desikan

Classical blockmodel is known as the simplest among models of networks with community structure. The model can be also seen as an extremely simply example of interconnected networks. For this reason, it is surprising that the percolation…

Disordered Systems and Neural Networks · Physics 2014-09-23 Maksymilian Bujok , Piotr Fronczak , Agata Fronczak

In the first paper of this series [S. Torquato, J. Chem. Phys. {\bf 136}, 054106 (2012)], analytical results concerning the continuum percolation of overlapping hyperparticles in $d$-dimensional Euclidean space $\mathbb{R}^d$ were obtained,…

Statistical Mechanics · Physics 2012-08-21 Salvatore Torquato , Yang Jiao

Galaxies are not uniformly distributed in space. On large scales the Universe displays coherent structure, with galaxies residing in groups and clusters on scales of ~1-3 Mpc/h, which lie at the intersections of long filaments of galaxies…

Cosmology and Nongalactic Astrophysics · Physics 2015-06-04 Alison L. Coil