Related papers: Categorified Path Calculus
Protein subcellular localization is an important factor in normal cellular processes and disease. While many protein localization resources treat it as static, protein localization is dynamic and heavily influenced by biological context.…
We prove a categorical duality between a class of abstract algebras of partial functions and a class of (small) topological categories. The algebras are the isomorphs of collections of partial functions closed under the operations of…
It is well-known and easy to show that even the following version of the directed travelling salesman problem is NP-complete: Given a strongly connected complete digraph $D=(V,A)$, a cost function $w: A\rightarrow \{0,1\}$ and a natural…
A categorification of the Beilinson-Lusztig-MacPherson form of the quantum sl(2) was constructed in the paper arXiv:0803.3652 by the second author. Here we enhance the graphical calculus introduced and developed in that paper to include…
In this monography, it is proposed to consider the concepts of spectra of edge cuts and edge cycles of a graph as a basic mathematical structure for solving the problem of graph isomorphism. An edge cut is defined by an edge and the…
Tape diagrams provide a convenient graphical notation for arrows of rig categories, i.e., categories equipped with two monoidal products, $\oplus$ and $\otimes$. In this work, we introduce Kleene-Cartesian rig categories, namely rig…
The simulation of the physical movement of multi-body systems at an atomistic level, with forces calculated from a quantum mechanical description of the electrons, motivates a graph partitioning problem studied in this article. Several…
Let $G$ be a complete graph with $n+1$ vertices. In a recent paper of the authors, it is shown that the path trees of the graph play a special role in the structure of the truncated powers and partition functions that are associated with…
We consider the algebra M_k(C) of k-by-k matrices over the complex numbers and view it as a crossed product with a group G of order k by embedding G in the symmetric group S_k via the regular representation and embedding S_k in M_k(C) in…
Graph product structure theory expresses certain graphs as subgraphs of the strong product of much simpler graphs. In particular, an elegant formulation for the corresponding structural theorems involves the strong product of a path and of…
This is an introduction to graph theory, from a geometric and analytic viewpoint. A finite graph $X$ is described by its adjacency matrix $d\in M_N(0,1)$, which can be thought of as being a kind of discrete Laplacian, and we first discuss…
Category theory unifies mathematical concepts, aiding comparisons across structures by incorporating objects and morphisms, which capture their interactions. It has influenced areas of computer science such as automata theory, functional…
We suggest an enhancement to structural coding through the use of (a) causally bound codes, (b) basic constructs of graph theory and (c) statistics. As is the norm with structural coding, the codes are collected into categories. The…
In this paper, we review a method for computing and parameterizing the set of homotopy classes of chain maps between two chain complexes. This is then applied to finding topologically meaningful maps between simplicial complexes, which in…
A Leavitt labelled path algebra over a commutative unital ring is associated with a labelled space, generalizing Leavitt path algebras associated with graphs and ultragraphs as well as torsion-free commutative algebras generated by…
Leavitt path algebras, which are algebras associated to directed graphs, were first introduced about 20 years ago. They have strong connections to such topics as symbolic dynamics, operator algebras, non-commutative geometry, representation…
Building on recent work of Robertson and Steger, we associate a C*-algebra to a combinatorial object which may be thought of as a higher rank graph. This C*-algebra is shown to be isomorphic to that of the associated path groupoid.…
Graphings serve as limit objects for bounded-degree graphs. We define the ``cycle matroid'' of a graphing as a submodular setfunction, with values in [0,1], which generalizes (up to normalization) the cycle matroid of finite graphs. We…
We introduce the class of rational plane curves parameterizable by conics as an extension of the family of curves parameterizable by lines (also known as monoid curves). We show that they are the image of monoid curves via suitable…
A Lie 2-algebra is a "categorified" version of a Lie algebra: that is, a category equipped with structures analogous those of a Lie algebra, for which the usual laws hold up to isomorphism. In the classical mechanics of point particles, the…