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Computer simulations can aid in understanding how collective materials properties emerge from interactions between simple constituents. Here, we introduce a coarse-grained model that enables simulation of networks of actin filaments, myosin…

Biological Physics · Physics 2018-12-07 Simon L. Freedman , Shiladitya Banerjee , Glen M. Hocky , Aaron R. Dinner

Soft-walled microchannels arise in many applications, ranging from organ-on-a-chip platforms to soft-robotic actuators. However, despite extensive research on their static and dynamic response, the potential failure of these devices has not…

Computational Engineering, Finance, and Science · Computer Science 2026-03-17 Ziyu Wang , Ivan C. Christov

A Balancing Domain Decomposition by Constraints (BDDC) preconditioner is constructed and analyzed for the solution of composite Discontinuous Galerkin discretizations of reaction-diffusion systems of ordinary and partial differential…

Numerical Analysis · Mathematics 2025-01-20 Ngoc Mai Monica Huynh , Fatemeh Chegini , Luca Franco Pavarino , Martin Weiser , Simone Scacchi

This study investigates the effects of geometric model reduction on blood flow simulations in the patient-specific descending aorta, followed by speed-accuracy trade-off analysis using 3D simulations. We demonstrate how wall shear stresses…

Fluid Dynamics · Physics 2025-12-12 Rishi Kumar , K. Muralidhar , Indranil Saha Dalal

We develop a robust and efficient iterative method for hyper-elastodynamics based on a novel continuum formulation recently developed. The numerical scheme is constructed based on the variational multiscale formulation and the…

Numerical Analysis · Mathematics 2019-02-20 Ju Liu , Alison L. Marsden

Problems of flexible mechanical metamaterials, and highly deformable porous solids in general, are rich and complex due to nonlinear mechanics and nontrivial geometrical effects. While numeric approaches are successful, analytic tools and…

Soft Condensed Matter · Physics 2022-06-08 Yohai Bar-Sinai , Gabriele Librandi , Katia Bertoldi , Michael Moshe

To facilitate rational molecular and materials design, this research proposes an integrated computational framework that combines stochastic simulation, ab initio quantum chemistry, and molecular docking. The suggested workflow allows…

Materials Science · Physics 2026-01-08 Md Rakibul Karim Akanda , Michael P. Richard

Predicting the behavior of turbulent flows using large-eddy simulation requires modeling of the subgrid-scale stress tensor. This tensor can be approximated using mixed models, which combine the dissipative nature of functional models with…

Fluid Dynamics · Physics 2021-01-11 L. B. Streher , M. H. Silvis , P. Cifani , R. W. C. P. Verstappen

The study of multiphase flows in porous media is fundamental to various fields, including oil recovery, CO2 sequestration, hydrogeology, and others. Accurate predictions of fluid behavior in these systems can enhance process efficiency…

Fluid Dynamics · Physics 2025-09-17 Roberto Lange , Gabriel M. Magalhães , Franciane F. Rocha , Hélio R. Neto

Mathematical models and numerical simulations are widely used in the field of hemodynamics, representing a valuable resource to better understand physiological and pathological processes. The theory behind the phenomenon is closely related…

Fluid Dynamics · Physics 2021-06-15 Giulia Bertaglia , Valerio Caleffi , Alessandro Valiani

We report on the development of a computational framework for the parallel, mesh-adaptive solution of systems of hyperbolic conservation laws like the time-dependent Euler equations in compressible gas dynamics or Magneto-Hydrodynamics…

Computational Physics · Physics 2007-05-23 J. Dreher , R. Grauer

A three-dimensional multi-scale computational homogenisation framework is developed for the prediction of nonlinear micro/meso-mechanical response of the fibre-reinforced polymer (FRP) composites. Two dominant damage mechanisms, i.e. matrix…

Computational Engineering, Finance, and Science · Computer Science 2016-10-18 Zahur Ullah , Lukasz Kaczmarczyk , Chris J. Pearce

We propose a modified suspension balance model (SBM) for the flow of red blood cells (RBCs) and other deformable particle suspensions in confined geometries. Specifically, the method includes the hydrodynamic lift force generated by…

Mathematical models and computer algorithms are developed to calculate dynamic stress concentration and fracture wave propagation in a reinforced composite sheet. The composite consists of a regular system alternating extensible fibers and…

Computational Physics · Physics 2012-03-09 M. Ayzenberg-Stepanenko , Z. Yanovitsky , G. Osharovich

This work outlines a diffuse interface method for the study of fracture and fragmentation in ductile metals at high strain-rates in Eulerian finite volume simulations. The work is based on an existing diffuse interface method capable of…

Computational Physics · Physics 2022-10-11 Tim Wallis , Philip T. Barton , Nikolaos Nikiforakis

Much work has been devoted to analysing thermodynamic models for solid dispersions with a view to identifying regions in the phase diagram where amorphous phase separation or drug recrystallization can occur. However, detailed partial…

Soft Condensed Matter · Physics 2020-06-26 Martin Meere , Giuseppe Pontrelli , Sean McGinty

The novel neural networks show great potential in solving partial differential equations. For single-phase flow problems in subsurface porous media with high-contrast coefficients, the key is to develop neural operators with accurate…

Machine Learning · Computer Science 2025-09-17 Peiqi Li , Jie Chen

In this work, we have developed a multiscale computational algorithm to couple finite element method with an open source molecular dynamics code --- the Large scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) --- to perform…

Soft Condensed Matter · Physics 2019-09-17 Takahiro Murashima , Shingo Urata , Shaofan Li

We present a two-level overlapping Schwarz preconditioner for three-dimensional problems discretized with the Virtual Element Method. Our approach handles general polyhedral meshes and irregular subdomains, extending the applicability of…

Numerical Analysis · Mathematics 2025-12-09 Ana Aguilar-Pineda , Luis F. Amey , Adrian Angulo-Paniagua , Juan G. Calvo

An efficient method for solving large nonlinear problems combines Newton solvers and Domain Decomposition Methods (DDM). In the DDM framework, the boundary conditions can be chosen to be primal, dual or mixed. The mixed approach presents…

Numerical Analysis · Mathematics 2018-02-07 Camille Negrello , Pierre Gosselet , Christian Rey