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As tractography datasets continue to grow in size, there is a need for improved visualization methods that can capture structural patterns occurring in large tractography datasets. Transparency is an increasingly important aspect of finding…

Graphics · Computer Science 2023-08-17 Besm Osman , Mestiez Pereira , Huub van de Wetering , Maxime Chamberland

In the real world, trajectory data is often sparse and incomplete due to low collection frequencies or limited device coverage. Trajectory recovery aims to recover these missing trajectory points, making the trajectories denser and more…

Artificial Intelligence · Computer Science 2025-03-25 Qingyue Long , Can Rong , Huandong Wang , Shaw Rajib , Yong Li

Tractography plays a pivotal role in the non-invasive reconstruction of white matter fiber pathways, providing vital information on brain connectivity and supporting precise neurosurgical planning. Although traditional methods relied mainly…

Machine Learning · Computer Science 2026-01-21 Ankita Joshi , Ashutosh Sharma , Anoushkrit Goel , Ranjeet Ranjan Jha , Chirag Ahuja , Arnav Bhavsar , Aditya Nigam

Tubular tree structures such as blood vessels and lung airways are central to many clinical tasks, including diagnosis, treatment planning, and surgical navigation. Accurate centerline extraction with correct topology is essential, as…

Computer Vision and Pattern Recognition · Computer Science 2026-03-13 Roman Naeem , David Hagerman , Jennifer Alvén , Fredrik Kahl

Fiber orientation distribution (FOD) is an advanced diffusion MRI modeling technique that represents complex white matter fiber configurations, and a key step for subsequent brain tractography and connectome analysis. Its reliability and…

We present a novel dual-encoded magnetization transfer (MT) and diffusion-weighted sequence and demonstrate its potential to resolve distinct properties of white matter fiber tracts at the sub-voxel level. The sequence was designed and…

Kernel-based non-linear dimensionality reduction methods, such as Local Linear Embedding (LLE) and Laplacian Eigenmaps, rely heavily upon pairwise distances or similarity scores, with which one can construct and study a weighted graph…

Statistics Theory · Mathematics 2019-08-06 Tingran Gao

We propose a new method, Patch-CNN, for diffusion tensor (DT) estimation from only six-direction diffusion weighted images (DWI). Deep learning-based methods have been recently proposed for dMRI parameter estimation, using either voxel-wise…

Computer Vision and Pattern Recognition · Computer Science 2023-07-06 Tobias Goodwin-Allcock , Ting Gong , Robert Gray , Parashkev Nachev , Hui Zhang

In structural brain networks the connections of interest consist of white-matter fibre bundles between spatially segregated brain regions. The presence, location and orientation of these white matter tracts can be derived using diffusion…

Neurons and Cognition · Quantitative Biology 2012-02-09 M. Hinne , T. Heskes , M. A. J. van Gerven

There are five types of trajectory prediction tasks: deterministic, stochastic, domain adaptation, momentary observation, and few-shot. These associated tasks are defined by various factors, such as the length of input paths, data split and…

Computer Vision and Pattern Recognition · Computer Science 2024-03-28 Inhwan Bae , Young-Jae Park , Hae-Gon Jeon

The differential equation-based image restoration approach aims to establish learnable trajectories connecting high-quality images to a tractable distribution, e.g., low-quality images or a Gaussian distribution. In this paper, we…

Computer Vision and Pattern Recognition · Computer Science 2025-06-10 Zhiyu Zhu , Jinhui Hou , Hui Liu , Huanqiang Zeng , Junhui Hou

We consider integrated circuits with semiconductors modeled by modified nodal analysis and drift-diffusion equations. The drift-diffusion equations are discretized in space using mixed finite element method. This discretization yields a…

Numerical Analysis · Mathematics 2010-03-03 Michael Hinze , Martin Kunkel

Diffusion-weighted magnetic resonance imaging (DW-MRI) is a critical imaging method for capturing and modeling tissue microarchitecture at a millimeter scale. A common practice to model the measured DW-MRI signal is via fiber orientation…

We propose a novel and efficient algorithm to model high-level topological structures of neuronal fibers. Tractography constructs complex neuronal fibers in three dimensions that exhibit the geometry of white matter pathways in the brain.…

Computer Vision and Pattern Recognition · Computer Science 2021-08-04 S. Shailja , Angela Zhang , B. S. Manjunath

Three dimensional Polarized Light Imaging (3D-PLI) is an optical technique which allows mapping the spatial fiber architecture of fibrous postmortem tissues, at sub-millimeter resolutions. Here, we propose an analytical and fast approach to…

Medical Physics · Physics 2020-12-18 A. Alimi , S. Deslauriers-Gauthier , F. Matuschke , A. Müller , S. E. A. Muenzing , M. Axer , R. Deriche

The inference latency of diffusion models remains a critical barrier to their real-time application. While trajectory-based and distribution-based step distillation methods offer solutions, they present a fundamental trade-off.…

Computer Vision and Pattern Recognition · Computer Science 2025-11-13 Hanbo Cheng , Peng Wang , Kaixiang Lei , Qi Li , Zhen Zou , Pengfei Hu , Jun Du

Far from equilibrium, neural systems self-organize across multiple scales. Exploiting multiscale self-organization in neuroscience and artificial intelligence requires a computational framework for modeling the effective non-equilibrium…

Neurons and Cognition · Quantitative Biology 2025-10-09 Nathan X. Kodama

High-quality GPS trajectories are essential for location-based web services and smart city applications, including navigation, ride-sharing and delivery. However, due to low sampling rates and limited infrastructure coverage during data…

Machine Learning · Computer Science 2026-03-23 Jinming Wang , Hai Wang , Hongkai Wen , Geyong Min , Man Luo

Multi-compartment modeling of diffusion-weighted magnetic resonance imaging measurements is necessary for accurate brain connectivity analysis. Existing methods for estimating the number and orientations of fascicles in an imaging voxel…

Image and Video Processing · Electrical Eng. & Systems 2020-06-22 Davood Karimi , Lana Vasung , Camilo Jaimes , Fedel Machado-Rivas , Shadab Khan , Simon K. Warfield , Ali Gholipour

Characterizing the properties and orientations of sub-voxel fiber populations, although essential to study white-matter architecture, microstructure and connectivity, remains one of the main challenges faced by the MRI microstructure…