Related papers: Linear-time computation of generalized minimal abs…
We show how to answer spatial multiple-set intersection queries in O(n(log w)/w + kt) expected time, where n is the total size of the t sets involved in the query, w is the number of bits in a memory word, k is the output size, and c is any…
The modular subset sum problem consists of deciding, given a modulus $m$, a multiset $S$ of $n$ integers in $0..m-1$, and a target integer $t$, whether there exists a subset of $S$ with elements summing to $t \mod m $, and to report such a…
We study the influence of a graph parameter called modular-width on the time complexity for optimally solving well-known polynomial problems such as Maximum Matching, Triangle Counting, and Maximum $s$-$t$ Vertex-Capacitated Flow. The…
We study here the so called subsequence pattern matching also known as hidden pattern matching in which one searches for a given pattern $w$ of length $m$ as a subsequence in a random text of length $n$. The quantity of interest is the…
The problem of k-minimisation for a DFA M is the computation of a smallest DFA N (where the size |M| of a DFA M is the size of the domain of the transition function) such that their recognized languages differ only on words of length less…
Let $W$ be a string of length $n$ over an alphabet $\Sigma$, $k$ be a positive integer, and $\mathcal{S}$ be a set of length-$k$ substrings of $W$. The ETFS problem asks us to construct a string $X_{\mathrm{ED}}$ such that: (i) no string of…
Palindromes are strings that read the same forward and backward. The computation of palindromic structures within strings is a fundamental problem in string algorithms, being motivated by potential applications in formal language theory and…
The edit distance of two strings is the minimum number of insertions, deletions, and substitutions of characters needed to transform one string into the other. The textbook dynamic-programming algorithm computes the edit distance of two…
In this paper we present a simple linear-time algorithm constructing a context-free grammar of size O(g log(N/g)) for the input string, where N is the size of the input string and g the size of the optimal grammar generating this string.…
We show that if DTIME[2^{O(n)}] is not included in DSPACE[2^{o(n)}], then, for every set B in PSPACE, all strings x in B of length n can be represented by a string compressed(x) of length at most log (|B^{=n}|) + O(log n), such that a…
Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…
The problem of dictionary matching is a classical problem in string matching: given a set S of d strings of total length n characters over an (not necessarily constant) alphabet of size sigma, build a data structure so that we can match in…
We show that if DTIME[2^O(n)] is not included in DSPACE[2^o(n)], then, for every set B in PSPACE/poly, all strings x in B of length n can be represented by a string compressed(x) of length at most log(|B^{=n}|)+O(log n), such that a…
We study quantum algorithms for several fundamental string problems, including Longest Common Substring, Lexicographically Minimal String Rotation, and Longest Square Substring. These problems have been widely studied in the stringology…
Two recent lower bounds on the compressibility of repetitive sequences, $\delta \le \gamma$, have received much attention. It has been shown that a length-$n$ string $S$ over an alphabet of size $\sigma$ can be represented within the…
For a word $S$, let $f(S)$ be the largest integer $m$ such that there are two disjoints identical (scattered) subwords of length $m$. Let $f(n, \Sigma) = \min \{f(S): S \text{is of length} n, \text{over alphabet} \Sigma \}$. Here, it is…
Real-world data often comes in compressed form. Analyzing compressed data directly (without decompressing it) can save space and time by orders of magnitude. In this work, we focus on fundamental sequence comparison problems and try to…
Merging $T$ sorted, non-redundant lists containing $M$ elements into a single sorted, non-redundant result of size $N \ge M/T$ is a classic problem typically solved practically in $O(M \log T)$ time with a priority-queue data structure the…
In this paper we investigate the problem of building a static data structure that represents a string s using space close to its compressed size, and allows fast access to individual characters of s. This type of structures was investigated…
Let $w$ be a finite word over the alphabet $\{0,1\}$. For any natural number $n$, let $s_w(n)$ denote the number of occurrence of $w$ in the binary expansion of $n$ as a scattered subsequence. We study the behavior of the partial sum…