Related papers: Computing all-vs-all MEMs in grammar-compressed te…
In this paper we present a simple linear-time algorithm constructing a context-free grammar of size O(g log(N/g)) for the input string, where N is the size of the input string and g the size of the optimal grammar generating this string.…
In the total matching problem, one is given a graph $G$ with weights on the vertices and edges. The goal is to find a maximum weight set of vertices and edges that is the non-incident union of a stable set and a matching. We consider the…
A Longest Common Extension (LCE) query on a text $T$ of length $N$ asks for the length of the longest common prefix of suffixes starting at given two positions. We show that the signature encoding $\mathcal{G}$ of size $w = O(\min(z \log N…
Genome-to-genome comparisons require designating anchor points, which are given by Maximum Exact Matches (MEMs) between their sequences. For large genomes this is a challenging problem and the performance of existing solutions, even in…
Classic grammars and regular expressions can be used for a variety of purposes, including parsing, intent detection, and matching. However, the comparisons are performed at a structural level, with constituent elements (words or characters)…
A simple linear-time algorithm for constructing a linear context-free tree grammar of size O(rg + r g log (n/r g))for a given input tree T of size n is presented, where g is the size of a minimal linear context-free tree grammar for T, and…
We analyze the grammar generation algorithm of the RePair compression algorithm and show the relation between a grammar generated by RePair and maximal repeats. We reveal that RePair replaces step by step the most frequent pairs within the…
We introduce a data structure for counting pattern occurrences in texts compressed with any run-length context-free grammar. Our structure uses space proportional to the grammar size and counts the occurrences of a pattern of length $m$ in…
Natural Language Processing enables computers to understand human language by analysing and classifying text efficiently with deep-level grammatical and semantic features. Existing models capture features by learning from large corpora with…
In this paper, we propose a new approach -- the Tempered Finite Element Method (TFEM) -- that extends the Finite Element Method (FEM) to classes of meshes that include zero-measure or nearly degenerate elements for which standard FEM…
We present a new approach to stochastic modeling of constraint-based grammars that is based on log-linear models and uses EM for estimation from unannotated data. The techniques are applied to an LFG grammar for German. Evaluation on an…
We present "GEMM-like Tensor-Tensor multiplication" (GETT), a novel approach to tensor contractions that mirrors the design of a high-performance general matrix-matrix multiplication (GEMM). The critical insight behind GETT is the…
A Random Access query to a string $T\in [0..\sigma)^n$ asks for the character $T[i]$ at a given position $i\in [0..n)$. In $O(n\log\sigma)$ bits of space, this fundamental task admits constant-time queries. While this is optimal in the…
Gaussian mixture models (GMMs) are fundamental statistical tools for modeling heterogeneous data. Due to the nonconcavity of the likelihood function, the Expectation-Maximization (EM) algorithm is widely used for parameter estimation of…
We propose a new approach for universal lossless text compression, based on grammar compression. In the literature, a target string $T$ has been compressed as a context-free grammar $G$ in Chomsky normal form satisfying $L(G) = \{T\}$. Such…
Grammatical error correction (GEC) is an important NLP task that is currently usually solved with autoregressive sequence-to-sequence models. However, approaches of this class are inherently slow due to one-by-one token generation, so…
We present an algorithm for searching regular expression matches in compressed text. The algorithm reports the number of matching lines in the uncompressed text in time linear in the size of its compressed version. We define efficient data…
GEneral Matrix Multiply (GEMM) is a central operation in deep learning and corresponds to the largest chunk of the compute footprint. Therefore, improving its efficiency is an active topic of ongoing research. A popular strategy is the use…
The field of Grammatical Error Correction (GEC) has produced various systems to deal with focused phenomena or general text editing. We propose an automatic way to combine black-box systems. Our method automatically detects the strength of…
Computing the {\em matching statistics} of a string $P[1..m]$ with respect to a text $T[1..n]$ is a fundamental problem which has application to genome sequence comparison. In this paper, we study the problem of computing the matching…