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Inhomogeneous random graphs are fundamental models for real-world networks, where prescribed degrees are imposed as soft constraints. A common assumption in such models is that the degree distribution follows a power-law, capturing the…

Probability · Mathematics 2026-03-09 Riccardo Michielan , Clara Stegehuis , Bert Zwart

We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…

Data Structures and Algorithms · Computer Science 2013-08-02 Taku Onodera , Kunihiko Sadakane , Tetsuo Shibuya

Maximal clique enumeration is a fundamental graph mining task, but its utility is often limited by computational intractability and highly redundant output. To address these challenges, we introduce \emph{$\rho$-dense aggregators}, a novel…

Data Structures and Algorithms · Computer Science 2025-12-04 Noga Alon , Sabyasachi Basu , Shweta Jain , Haim Kaplan , Jakub Łącki , Blair D. Sullivan

Finding cohesive subgraphs in a large graph has many important applications, such as community detection and biological network analysis. Clique is often a too strict cohesive structure since communities or biological modules rarely form as…

Data Structures and Algorithms · Computer Science 2024-06-11 Qihao Cheng , Da Yan , Tianhao Wu , Lyuheng Yuan , Ji Cheng , Zhongyi Huang , Yang Zhou

Let k_r(n,m) denote the minimum number of r-cliques in graphs with n vertices and m edges. For r=3,4 we give a lower bound on k_r(n,m) that approximates k_r(n,m) with an error smaller than n^r/(n^2-2m). The solution is based on a constraint…

Combinatorics · Mathematics 2008-02-19 Vladimir Nikiforov

A clique-coloring of a graph $G$ is a coloring of the vertices of $G$ so that no maximal clique of size at least two is monochromatic. The clique-hypergraph, $\mathcal{H}(G)$, of a graph $G$ has $V(G)$ as its set of vertices and the maximal…

Combinatorics · Mathematics 2014-08-22 Erfang Shan , Yuxiao Sun , Liying Kang

In extremal graph theory, the problem of finding the elements of a given class of graphs which contain the most cliques traces its routes back to Tur\'an's famous theorem. We consider the implications of the connectivity property of…

Combinatorics · Mathematics 2018-10-11 Corbin Groothuis

A k-clique covering of a simple graph G, is an edge covering of G by its cliques such that each vertex is contained in at most k cliques. The smallest k for which G admits a k-clique covering is called local clique cover number of G and is…

Combinatorics · Mathematics 2012-10-26 Ramin Javadi , Zeinab Maleki , Behnaz Omoomi

Large real-world graphs tend to be sparse, but they often contain many densely connected subgraphs and exhibit high clustering coefficients. While recent random graph models can capture this sparsity, they ignore the local density, or vice…

Methodology · Statistics 2019-07-18 Sinead A. Williamson , Mauricio Tec

Using a maximum entropy principle to assign a statistical weight to any graph, we introduce a model of random graphs with arbitrary degree distribution in the framework of standard statistical mechanics. We compute the free energy and the…

Disordered Systems and Neural Networks · Physics 2007-05-23 M. Bauer , D. Bernard

We propose and study a hierarchical algorithm to generate graphs having a predetermined distribution of cliques, the fully connected subgraphs. The construction mechanism may be either random or incorporate preferential attachment. We…

Physics and Society · Physics 2009-11-13 Gregor Kaczor , Claudius Gros

We present a new parallel algorithm for $k$-clique counting/listing that has polylogarithmic span (parallel time) and is work-efficient (matches the work of the best sequential algorithm) for sparse graphs. Our algorithm is based on…

Data Structures and Algorithms · Computer Science 2021-07-19 Jessica Shi , Laxman Dhulipala , Julian Shun

We show that a graph with $n$ vertices and vertex cover of size $k$ has at most $4^k + n$ potential maximal cliques. We also show that for each positive integer $k$, there exists a graph with vertex cover of size $k$, $O(k^2)$ vertices, and…

Combinatorics · Mathematics 2020-11-24 Tuukka Korhonen

Quasi-cliques are dense incomplete subgraphs of a graph that generalize the notion of cliques. Enumerating quasi-cliques from a graph is a robust way to detect densely connected structures with applications to bio-informatics and social…

Data Structures and Algorithms · Computer Science 2020-02-04 Seyed-Vahid Sanei-Mehri , Apurba Das , Srikanta Tirthapura

Deep neural networks have been applied to a wide range of problems across different application domains with great success. Recently, research into combinatorial optimization problems in particular has generated much interest in the machine…

Machine Learning · Computer Science 2021-08-05 Jason Van Hulse , Joshua S. Friedman

Two of the most fundamental distributed symmetry-breaking problems are that of finding a maximal independent set (MIS) and a maximal matching (MM) in a graph. It is a major open question whether these problems can be solved in constant…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-03 Keren Censor-Hillel , Tomer Even , Maxime Flin , Magnús M. Halldórsson

Many natural computational problems, including e.g. Max Weight Independent Set, Feedback Vertex Set, or Vertex Planarization, can be unified under an umbrella of finding the largest sparse induced subgraph, that satisfies some property…

Data Structures and Algorithms · Computer Science 2026-05-19 Maria Chudnovsky , Jadwiga Czyżewska , Kacper Kluk , Marcin Pilipczuk , Paweł Rzążewski

The notion of k-clique percolation in random graphs is introduced, where k is the size of the complete subgraphs whose large scale organizations are analytically and numerically investigated. For the Erdos-Renyi graph of N vertices we…

Disordered Systems and Neural Networks · Physics 2007-05-23 Imre Derenyi , Gergely Palla , Tamas Vicsek

A grounded 1-bend string graph is an intersection graph of a set of polygonal lines, each with one bend, such that the lines lie above a common horizontal line $\ell$ and have exactly one endpoint on $\ell$. We show that the problem of…

Computational Geometry · Computer Science 2021-07-13 J. Mark Keil , Debajyoti Mondal , Ehsan Moradi , Yakov Nekrich

In this work, we consider the problem of sampling a $k$-clique in a graph from an almost uniform distribution in sublinear time in the general graph query model. Specifically the algorithm should output each $k$-clique with probability…

Data Structures and Algorithms · Computer Science 2020-12-09 Talya Eden , Dana Ron , Will Rosenbaum