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In this contribution, we deal with seed-based information retrieval in networks of research publications. Using systematic reviews as a baseline, and publication data from the NIH Open Citation Collection, we compare the performance of the…

Information Retrieval · Computer Science 2024-06-14 Peter Sjögårde , Per Ahlgren

Current citation practices observed in articles are very noisy, confusing, and not standardised, making identifying the cited works problematic for hu-mans and any reference extraction software. In this work, we want to investigate such…

Digital Libraries · Computer Science 2022-07-22 Erika Alves dos Santos , Silvio Peroni , Marcos Luiz Mucheroni

In this paper, we present COCI, the OpenCitations Index of Crossref open DOI-to-DOI citations (http://opencitations.net/index/coci). COCI is the first open citation index created by OpenCitations, in which we have applied the concept of…

Digital Libraries · Computer Science 2019-09-25 Ivan Heibi , Silvio Peroni , David Shotton

Open data is receiving increased attention and support in academic environments, with one justification being that shared data may be re-used in further research. But what evidence exists for such re-use, and what is the relationship…

Digital Libraries · Computer Science 2023-08-09 Geoff Krause , Madelaine Hare , Mike Smit , Philippe Mongeon

We present a content-based method for recommending citations in an academic paper draft. We embed a given query document into a vector space, then use its nearest neighbors as candidates, and rerank the candidates using a discriminative…

Computation and Language · Computer Science 2018-02-26 Chandra Bhagavatula , Sergey Feldman , Russell Power , Waleed Ammar

In today's data-driven research landscape, dataset visibility and accessibility play a crucial role in advancing scientific knowledge. At the same time, data citation is essential for maintaining academic integrity, acknowledging…

Digital Libraries · Computer Science 2025-06-23 Fakhri Momeni , Janete Saldanha Bach , Brigitte Mathiak , Peter Mutschke

Effective scientific communication depends on accurate citations that validate sources and guide readers to supporting evidence. Yet academic literature faces mounting challenges: semantic citation errors that misrepresent sources,…

Computation and Language · Computer Science 2025-11-21 Sebastian Haan

Citation indexes are by now part of the research infrastructure in use by most scientists: a necessary tool in order to cope with the increasing amounts of scientific literature being published. Commercial citation indexes are designed for…

Digital Libraries · Computer Science 2022-05-17 Giovanni Colavizza , Silvio Peroni , Matteo Romanello

Public omics databases like the Gene Expression Omnibus and the Sequence Read Archive offer substantial opportunities for data reuse to address novel biomedical questions. However, it is still difficult to find samples and studies of…

The number of biomedical research articles published has doubled in the past 20 years. Search engine based systems naturally center around searching, but researchers may not have a clear goal in mind, or the goal may be expressed in a query…

Digital Libraries · Computer Science 2017-10-25 Jessica Perrie , Yanqi Hao , Zack Hayat , Recep Colak , Kelly Lyons , Shankar Vembu , Sam Molyneux

The need for open scientific knowledge graphs is ever increasing. While there are large repositories of open access articles and free publication indexes, there are still few free knowledge graphs exposing citation networks, and often their…

Digital Libraries · Computer Science 2021-05-19 Federica Bologna , Angelo Di Iorio , Silvio Peroni , Francesco Poggi

Citation recommendation systems aim to recommend citations for either a complete paper or a small portion of text called a citation context. The process of recommending citations for citation contexts is called local citation recommendation…

Information Retrieval · Computer Science 2020-06-02 Michael Färber , Ashwath Sampath

In the scientific digital libraries, some papers from different research communities can be described by community-dependent keywords even if they share a semantically similar topic. Articles that are not tagged with enough keyword…

Digital Libraries · Computer Science 2018-06-22 Hussein T. Al-Natsheh , Lucie Martinet , Fabrice Muhlenbach , Fabien Rico , Djamel A. Zighed

Citation analysis is one of the most frequently used methods in research evaluation. We are seeing significant growth in citation analysis through bibliometric metadata, primarily due to the availability of citation databases such as the…

Digital Libraries · Computer Science 2020-09-01 Sehrish Iqbal , Saeed-Ul Hassan , Naif Radi Aljohani , Salem Alelyani , Raheel Nawaz , Lutz Bornmann

Within the past few decades we have witnessed digital revolution, which moved scholarly communication to electronic media and also resulted in a substantial increase in its volume. Nowadays keeping track with the latest scientific…

Digital Libraries · Computer Science 2017-10-30 Dominika Tkaczyk

Scientific research is a key input into technological innovation, yet not all scientific knowledge is equally mobilized in patents. This paper examines how different scientific publishing models shape both the selection of scientific…

Digital Libraries · Computer Science 2026-04-09 Abdelghani Maddi , Chongjun Xi , Xiaoting Chen , Isabelle Dorsch , Marc-André Simard

Bibliographic reference parsers extract machine-readable metadata such as author names, title, journal, and year from bibliographic reference strings. To extract the metadata, the parsers apply heuristics or machine learning. However, no…

Information Retrieval · Computer Science 2018-11-27 Dominika Tkaczyk , Rohit Gupta , Riccardo Cinti , Joeran Beel

The existence of an open access (OA) citation advantage, that is, whether OA increases citations, has been a topic of interest for many years. Although numerous previous studies have focused on whether OA increases citations, expectations…

Digital Libraries · Computer Science 2025-04-16 Kai Nishikawa , Akiyoshi Murakami

Citation parsing is fundamental for search engines within academia and the protection of intellectual property. Meticulous extraction is further needed when evaluating the similarity of documents and calculating their citation impact.…

Digital Libraries · Computer Science 2018-05-23 Niall Martin Ryan

Metadata, often termed "data about data," is crucial for organizing, understanding, and managing vast omics datasets. It aids in efficient data discovery, integration, and interpretation, enabling users to access, comprehend, and utilize…