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We study the evolution of the network properties of a populated network embedded in a genotype space characterised by either a low or a high number of potential links, with particular emphasis on the connectivity and clustering. Evolution…

Statistical Mechanics · Physics 2007-05-23 Paul Anderson , Henrik Jeldtoft Jensen

Ecosystems are formed by networks of species and their interactions. Traditional models of such interactions assume a constant interaction strength between a given pair of species. However, there is often significant trait variation among…

Populations and Evolution · Quantitative Biology 2022-05-03 Zachary Jackson , BingKan Xue

Systems composed of distinct complex networks are present in many real-world environments, from society to ecological systems. In the present paper, we propose a network model obtained as a consequence of interactions between two species…

Biological Physics · Physics 2007-08-08 Luis Enrique Correa da Rocha , Luciano da Fontoura Costa

The study of interactions between multiple species in an ecosystem is an active and impactful direction of inquiry. This is true in particular for fragile systems in which even small perturbations of their functional parameters can produce…

Populations and Evolution · Quantitative Biology 2025-01-14 Anca Radulescu , Richard Halpern , Drew Kozlowski , Conor O'Riordan

The stability of ecosystems as well as the relation between topology and dynamics on multilayer networks are important questions that are usually discussed in separate communities. Here, we combine these two topics by investigating the…

Populations and Evolution · Quantitative Biology 2015-07-24 Jonas Richhardt , Sebastian Plitzko , Florian Schwarzmüller , Barbara Drossel

We use food webs generated by a model to investigate the effects of deleting species on other species in the web and on the web as a whole. The model incorporates a realistic population dynamics, adaptive foragers and other features which…

Populations and Evolution · Quantitative Biology 2007-05-23 Christopher Quince , Paul Higgs , Alan McKane

We present a model for evolution and extinction in large ecosystems. The model incorporates the effects of interactions between species and the influences of abiotic environmental factors. We study the properties of the model by approximate…

adap-org · Physics 2008-02-03 Bruce W. Roberts , M. E. J. Newman

Understanding the architectural subtleties of ecological networks, believed to confer them enhanced stability and robustness, is a subject of outmost relevance. Mutualistic interactions have been profusely studied and their corresponding…

Populations and Evolution · Quantitative Biology 2015-02-19 Virginia Domínguez-García , Miguel A. Muñoz

We present numerical results based on a simplified ecological system in evolution, showing features of extinction similar to that claimed for the biosystem on Earth. In the model each species consists of a population in interaction with the…

adap-org · Physics 2009-10-28 Guillermo Abramson

Simulations of the coevolution of many interacting species are performed using the Webworld model. The model has a realistic set of predator-prey equations that describe the population dynamics of the species for any structure of the food…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Christopher Quince , Paul G. Higgs , Alan J. McKane

Mutualistic networks have been shown to involve complex patterns of interactions among animal and plant species. The architecture of these webs seems to pervade some of their robust and fragile behaviour. Recent work indicates that there is…

Populations and Evolution · Quantitative Biology 2016-12-07 Sergi Valverde , Jose Montoya , Lucas Joppa , Ricard Sole

Resilient ecological systems will be better able to maintain their structure and function in the emerging Anthropocene. Estimating the resilience of different systems will therefore provide valuable insight for conservation decision-makers,…

Dynamical Systems · Mathematics 2023-06-16 Cailan Jeynes-Smith , Michael Bode , Robyn P. Araujo

Ecological networks such as plant-pollinator systems and food webs vary in space and time. This variability includes fluctuations in global network properties such as total number and intensity of interactions but also in the local…

Quantitative Methods · Quantitative Biology 2022-12-23 Tancredi Caruso , Giulio Virginio Clemente , Matthias C Rillig , Diego Garlaschelli

We present new theoretical and empirical results on the probability distributions of species persistence times in natural ecosystems. Persistence times, defined as the timespans occurring between species' colonization and local extinction…

Populations and Evolution · Quantitative Biology 2012-03-21 S. Suweis , E. Bertuzzo , L. Mari , I. Rodriguez-Iturbe , A. Maritan , A. Rinaldo

Individual species may experience diverse outcomes, from prosperity to extinction, in an ecological community subject to external and internal variations. Despite the wealth of theoretical results derived from random matrix ensembles, a…

Populations and Evolution · Quantitative Biology 2024-06-12 Andrus Giraldo , Deok-Sun Lee

The dynamics of ecosystem collapse are fundamental to determining how and why biological communities change through time, as well as the potential effects of extinctions on ecosystems. Here we integrate depictions of mammals from Egyptian…

Populations and Evolution · Quantitative Biology 2014-09-25 Justin D. Yeakel , Mathias M. Pires , Lars Rudolf , Nathaniel J. Dominy , Paul L. Koch , Paulo R. Guimarães , Thilo Gross

Disordered systems theory provides powerful tools to analyze the generic behaviors of highdimensional systems, such as species-rich ecological communities or neural networks. By assuming randomness in their interactions, universality…

Populations and Evolution · Quantitative Biology 2025-03-20 Juan Giral Martínez

Methods for predicting the probability and timing of a species' extinction are typically based on a combination of theoretical models and empirical data, and focus on single species population dynamics. Of course, species also interact with…

Populations and Evolution · Quantitative Biology 2012-06-11 Gian Marco Palamara , Gustav W. Delius , Matthew J. Smith , Owen L. Petchey

The observed architecture of ecological and socio-economic networks differs significantly from that of random networks. From a network science standpoint, non-random structural patterns observed in real networks call for an explanation of…

Physics and Society · Physics 2019-05-30 Manuel Sebastian Mariani , Zhuo-Ming Ren , Jordi Bascompte , Claudio Juan Tessone

We develop a set of equations to describe the population dynamics of many interacting species in food webs. Predator-prey interactions are non-linear, and are based on ratio-dependent functional responses. The equations account for…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Barbara Drossel , Paul G. Higgs , Alan J. McKane