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Healthcare AI holds the potential to increase patient safety, augment efficiency and improve patient outcomes, yet research is often limited by data access, cohort curation, and tooling for analysis. Collection and translation of electronic…

Software Engineering · Computer Science 2021-12-14 Raphael Y. Cohen , Vesela P. Kovacheva

As part of their training all medical students and residents have to pass basic surgical tasks such as knot tying, needle-passing, and suturing. Their assessment is typically performed in the operating room by surgical faculty where…

Computer Vision and Pattern Recognition · Computer Science 2023-12-27 Yunzhe Xue , Olanrewaju Eletta , Justin W. Ady , Nell M. Patel , Advaith Bongu , Usman Roshan

Automated decision support can accelerate tedious tasks as users can focus their attention where it is needed most. However, a key concern is whether users overly trust or cede agency to automation. In this paper, we investigate the effects…

Human-Computer Interaction · Computer Science 2021-03-30 Ariel Levy , Monica Agrawal , Arvind Satyanarayan , David Sontag

Clinician burnout has motivated the growing adoption of ambient medical scribes in the clinic. In this work, we introduce a custom-built ambient scribe application integrated into the EHR system at Included Health, a personalized all-in-one…

Human-Computer Interaction · Computer Science 2025-07-25 Justin Morse , Kurt Gilbert , Kyle Shin , Rick Cooke , Peyton Rose , Jack Sullivan , Angelo Sisante

word2vec affords a simple yet powerful approach of extracting quantitative variables from unstructured textual data. Over half of healthcare data is unstructured and therefore hard to model without involved expertise in data engineering and…

Computation and Language · Computer Science 2015-03-18 Manuel Amunategui , Tristan Markwell , Yelena Rozenfeld

Objective: To describe the design and early clinical evaluation of The Daily Dose (TDD), an LLM-driven, automated clinical summarization and clinical-trial identification system integrated into routine radiation oncology practice. Design:…

Clinical trial data cleaning represents a critical bottleneck in drug development, with manual review processes struggling to manage exponentially increasing data volumes and complexity. This paper presents Octozi, an artificial…

Computer Vision and Pattern Recognition · Computer Science 2025-08-15 Matthew Purri , Amit Patel , Erik Deurrell

While scientists increasingly recognize the importance of metadata in describing their data, spreadsheets remain the preferred tool for supplying this information despite their limitations in ensuring compliance and quality. Various tools…

Digital Libraries · Computer Science 2023-12-15 Martin J. O'Connor , Marcos Martínez-Romero , Mete Ugur Akdogan , Josef Hardi , Mark A. Musen

The growing adoption of interactive learning tools in higher education offers new opportunities to enhance student performance and well-being. This study compares the effects of traditional and interactive learning methods on academic…

Human-Computer Interaction · Computer Science 2026-04-20 Siva Raja Sindiramutty

Background: Medication review is a structured interview of the patient, performed by the pharmacist and aimed at optimizing drug treatments. In practice, medication review is a long and cognitively-demanding task that requires specific…

In the United States, 25% or greater than 200 billion dollars of hospital spending accounts for administrative costs that involve services for medical coding and billing. With the increasing number of patient records, manual assignment of…

Computation and Language · Computer Science 2020-03-18 A. K. Bhavani Singh , Mounika Guntu , Ananth Reddy Bhimireddy , Judy W. Gichoya , Saptarshi Purkayastha

This study examines the effect of prompt engineering on the performance of Large Language Models (LLMs) in clinical note generation. We introduce an Automatic Prompt Optimization (APO) framework to refine initial prompts and compare the…

Computation and Language · Computer Science 2024-07-08 Zonghai Yao , Ahmed Jaafar , Beining Wang , Zhichao Yang , Hong Yu

In the medical domain, identifying and expanding abbreviations in clinical texts is a vital task for both better human and machine understanding. It is a challenging task because many abbreviations are ambiguous especially for intensive…

Computation and Language · Computer Science 2018-06-11 Yue Liu , Tao Ge , Kusum S. Mathews , Heng Ji , Deborah L. McGuinness

Objective: realtime monitoring of invasive ventilation (iV) in intensive care units (ICUs) plays a crucial role in ensuring prompt interventions and better patient outcomes. However, conventional methods often overlook valuable insights…

Computation and Language · Computer Science 2024-10-08 Arash Pakbin , Aaron Su , Donald K. K. Lee , Bobak J. Mortazavi

Evaluating automatically generated text is generally hard due to the inherently subjective nature of many aspects of the output quality. This difficulty is compounded in automatic consultation note generation by differing opinions between…

Computation and Language · Computer Science 2022-11-18 Aleksandar Savkov , Francesco Moramarco , Alex Papadopoulos Korfiatis , Mark Perera , Anya Belz , Ehud Reiter

Accurate annotation of medical image is the crucial step for image AI clinical application. However, annotating medical image will incur a great deal of annotation effort and expense due to its high complexity and needing experienced…

Machine Learning · Computer Science 2019-01-09 Yang Deng , Yao Sun , Yongpei Zhu , Yue Xu , Qianxi Yang , Shuo Zhang , Mingwang Zhu , Jirang Sun , Weiling Zhao , Xiaobo Zhou , Kehong Yuan

Automatic International Classification of Diseases (ICD) coding aims to assign multiple ICD codes to a medical note with average length of 3,000+ tokens. This task is challenging due to a high-dimensional space of multi-label assignment…

Computation and Language · Computer Science 2022-10-14 Zhichao Yang , Shufan Wang , Bhanu Pratap Singh Rawat , Avijit Mitra , Hong Yu

This paper proposes a deep learning-based method to identify the segments of a clinical note corresponding to ICD-9 broad categories which are further color-coded with respect to 17 ICD-9 categories. The proposed Medical Segment Colorer…

Computation and Language · Computer Science 2021-01-28 Maha Alkhairy

Predicting discharge medications right after a patient being admitted is an important clinical decision, which provides physicians with guidance on what type of medication regimen to plan for and what possible changes on initial medication…

Computation and Language · Computer Science 2017-12-06 Yuan Yang , Pengtao Xie , Xin Gao , Carol Cheng , Christy Li , Hongbao Zhang , Eric Xing

Case Report Forms (CRFs) collect data about patients and are at the core of well-established practices to conduct research in clinical settings. With the recent progress of language technologies, there is an increasing interest in automatic…

Computation and Language · Computer Science 2026-02-27 Gabriela Anna Kaczmarek , Pietro Ferrazzi , Lorenzo Porta , Vicky Rubini , Bernardo Magnini