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We consider error-correcting coding for deoxyribonucleic acid (DNA)-based storage using nanopore sequencing. We model the DNA storage channel as a sampling noise channel where the input data is chunked into $M$ short DNA strands, which are…

Information Theory · Computer Science 2024-06-21 Lorenz Welter , Roman Sokolovskii , Thomas Heinis , Antonia Wachter-Zeh , Eirik Rosnes , Alexandre Graell i Amat

With the development of gene sequencing technology, an explosive growth of gene data has been witnessed. And the storage of gene data has become an important issue. Traditional gene data compression methods rely on general software like…

Machine Learning · Computer Science 2023-02-01 Zhanbei Cui , Yu Liao , Tongda Xu , Yan Wang

DNA Data storage has recently attracted much attention due to its durable preservation and extremely high information density (bits per gram) properties. In this work, we propose a hybrid coding strategy comprising of generalized…

Information Theory · Computer Science 2021-12-20 Yixin Wang , Li Deng , Md. Noor-A-Rahim , Erry Gunawan , Yong L. Guan , Zhi P. Shi , Chueh L. Poh

Lossy image compression is one of the most commonly used operators for digital images. Most recently proposed deep-learning-based image compression methods leverage the auto-encoder structure, and reach a series of promising results in this…

Computer Vision and Pattern Recognition · Computer Science 2020-07-09 Yaolong Wang , Mingqing Xiao , Chang Liu , Shuxin Zheng , Tie-Yan Liu

In the realm of image processing and computer vision (CV), machine learning (ML) architectures are widely applied. Convolutional neural networks (CNNs) solve a wide range of image processing issues and can solve image compression problem.…

Image and Video Processing · Electrical Eng. & Systems 2022-01-25 Sonain Jamil , Md. Jalil Piran , MuhibUrRahman

This paper outlines an end-to-end optimized lossy image compression framework using diffusion generative models. The approach relies on the transform coding paradigm, where an image is mapped into a latent space for entropy coding and, from…

Image and Video Processing · Electrical Eng. & Systems 2024-01-03 Ruihan Yang , Stephan Mandt

Studying the solar system and especially the Sun relies on the data gathered daily from space missions. These missions are data-intensive and compressing this data to make them efficiently transferable to the ground station is a twofold…

Recent research has shown a strong theoretical connection between variational autoencoders (VAEs) and the rate-distortion theory. Motivated by this, we consider the problem of lossy image compression from the perspective of generative…

Image and Video Processing · Electrical Eng. & Systems 2023-03-28 Zhihao Duan , Ming Lu , Zhan Ma , Fengqing Zhu

Lossy image compression is generally formulated as a joint rate-distortion optimization to learn encoder, quantizer, and decoder. However, the quantizer is non-differentiable, and discrete entropy estimation usually is required for rate…

Computer Vision and Pattern Recognition · Computer Science 2017-09-20 Mu Li , Wangmeng Zuo , Shuhang Gu , Debin Zhao , David Zhang

We address the challenge of applying existing convolutional neural network (CNN) architectures to compressed images. Existing CNN architectures represent images as a matrix of pixel intensities with a specified dimension; this desired…

Computer Vision and Pattern Recognition · Computer Science 2019-11-22 Christopher A. George , Bradley M. West

Physics-constrained data-driven computing is an emerging computational paradigm that allows simulation of complex materials directly based on material database and bypass the classical constitutive model construction. However, it remains…

Numerical Analysis · Mathematics 2022-09-12 Xiaolong He , Qizhi He , Jiun-Shyan Chen

Scientific datasets present unique challenges for machine learning-driven compression methods, including more stringent requirements on accuracy and mitigation of potential invalidating artifacts. Drawing on results from compressed sensing…

Machine Learning · Computer Science 2024-05-24 Matthias Chung , Rick Archibald , Paul Atzberger , Jack Michael Solomon

Storing digital data in synthetic DNA faces challenges in ensuring data reliability in the presence of edit errors--deletions, insertions, and substitutions--that occur randomly during various stages of the storage process. Current…

Information Theory · Computer Science 2025-09-11 Serge Kas Hanna

With the rapid advancements in digital imaging systems and networking, low-cost hand-held image capture devices equipped with network connectivity are becoming ubiquitous. This ease of digital image capture and sharing is also accompanied…

Multimedia · Computer Science 2019-06-20 Vinay Verma , Nikita Agarwal , Nitin Khanna

DNA synthesis is considered as one of the most expensive components in current DNA storage systems. In this paper, focusing on a common synthesis machine, which generates multiple DNA strands in parallel following a fixed supersequence,we…

Information Theory · Computer Science 2025-05-13 Yajuan Liu , Tolga M. Duman

One critical component in lossy deep image compression is the entropy model, which predicts the probability distribution of the quantized latent representation in the encoding and decoding modules. Previous works build entropy models upon…

Image and Video Processing · Electrical Eng. & Systems 2023-03-16 Yichen Qian , Ming Lin , Xiuyu Sun , Zhiyu Tan , Rong Jin

DNA strands serve as a storage medium for $4$-ary data over the alphabet $\{A,T,G,C\}$. DNA data storage promises formidable information density, long-term durability, and ease of replicability. However, information in this intriguing…

Information Theory · Computer Science 2024-08-06 Canberk İrimağzı , Yusuf Uslan , Ahmed Hareedy

Deep Neural Networks trained as image auto-encoders have recently emerged as a promising direction for advancing the state-of-the-art in image compression. The key challenge in learning such networks is twofold: To deal with quantization,…

Computer Vision and Pattern Recognition · Computer Science 2019-06-05 Fabian Mentzer , Eirikur Agustsson , Michael Tschannen , Radu Timofte , Luc Van Gool

Weakly-supervised anomaly detection aims at learning an anomaly detector from a limited amount of labeled data and abundant unlabeled data. Recent works build deep neural networks for anomaly detection by discriminatively mapping the normal…

Machine Learning · Computer Science 2021-08-29 Yingjie Zhou , Xucheng Song , Yanru Zhang , Fanxing Liu , Ce Zhu , Lingqiao Liu

Recent advancements in deep learning-based image compression are notable. However, prevalent schemes that employ a serial context-adaptive entropy model to enhance rate-distortion (R-D) performance are markedly slow. Furthermore, the…

Applications · Statistics 2024-03-25 Haisheng Fu , Feng Liang , Jie Liang , Zhenman Fang , Guohe Zhang , Jingning Han