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Graph kernels are usually defined in terms of simpler kernels over local substructures of the original graphs. Different kernels consider different types of substructures. However, in some cases they have similar predictive performances,…

Machine Learning · Computer Science 2016-07-22 Nicolò Navarin , Alessandro Sperduti , Riccardo Tesselli

Kernelization is a theoretical formalization of efficient preprocessing for NP-hard problems. Empirically, preprocessing is highly successful in practice, for example in state-of-the-art ILP-solvers like CPLEX. Motivated by this, previous…

Computational Complexity · Computer Science 2015-06-26 Bart M. P. Jansen , Stefan Kratsch

Graph clustering is a fundamental problem in unsupervised learning, with numerous applications in computer science and in analysing real-world data. In many real-world applications, we find that the clusters have a significant high-level…

Data Structures and Algorithms · Computer Science 2023-01-02 Peter Macgregor

We present a first theoretical analysis of the power of polynomial-time preprocessing for important combinatorial problems from various areas in AI. We consider problems from Constraint Satisfaction, Global Constraints, Satisfiability,…

Artificial Intelligence · Computer Science 2014-06-13 Serge Gaspers , Stefan Szeider

A polynomial Turing compression (PTC) for a parameterized problem $L$ is a polynomial time Turing machine that has access to an oracle for a problem $L'$ such that a polynomial in the input parameter bounds each query. Meanwhile, a…

Data Structures and Algorithms · Computer Science 2023-12-15 Weidong Luo

This work deals with the optimization of computer programs targeting Graphics Processing Units (GPUs). The goal is to lift, from programmers to optimizing compilers, the heavy burden of determining program details that are dependent on the…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-01-16 Xiaohui Chen , Marc Moreno-Maza , Jeeva Paudel , Ning Xie

The Weisfeiler-Lehman graph kernels are among the most prevalent graph kernels due to their remarkable time complexity and predictive performance. Their key concept is based on an implicit comparison of neighborhood representing trees with…

Machine Learning · Computer Science 2021-01-21 Till Hendrik Schulz , Tamás Horváth , Pascal Welke , Stefan Wrobel

Graph kernels are often used in bioinformatics and network applications to measure the similarity between graphs; therefore, they may be used to construct efficient graph classifiers. Many graph kernels have been developed thus far, but to…

Quantum Physics · Physics 2022-11-01 Kaito Kishi , Takahiko Satoh , Rudy Raymond , Naoki Yamamoto , Yasubumi Sakakibara

We argue that parameterized complexity is a useful tool with which to study global constraints. In particular, we show that many global constraints which are intractable to propagate completely have natural parameters which make them…

Artificial Intelligence · Computer Science 2009-03-04 Christian Bessiere , Emmanuel Hebrard , Brahim Hnich , Zeynep Kiziltan , Toby Walsh

In this paper, we devise a scheme for kernelizing, in sublinear space and polynomial time, various problems on planar graphs. The scheme exploits planarity to ensure that the resulting algorithms run in polynomial time and use O((sqrt(n) +…

Data Structures and Algorithms · Computer Science 2023-07-04 Arindam Biswas , Johannes Meintrup

We present efficient combinatorial parameterized algorithms for several classical graph-based counting problems in computational chemistry, including (i) Kekule structures, (ii) the Hosoya index, (iii) the Merrifield-Simmons index, and (iv)…

Data Structures and Algorithms · Computer Science 2025-08-12 Giovanna K. Conrado , Amir K. Goharshady , Harshit J. Motwani , Sergei Novozhilov

We consider the problem of classifying graphs using graph kernels. We define a new graph kernel, called the generalized shortest path kernel, based on the number and length of shortest paths between nodes. For our example classification…

Data Structures and Algorithms · Computer Science 2015-11-20 Linus Hermansson , Fredrik D. Johansson , Osamu Watanabe

In this paper, we study the Target Set Selection problem from a parameterized complexity perspective. Here for a given graph and a threshold for each vertex, the task is to find a set of vertices (called a target set) which activates the…

Data Structures and Algorithms · Computer Science 2020-08-17 Pavel Dvořák , Dušan Knop , Tomáš Toufar

The paper gives an overview of recent advances in structural equation modeling. A structural equation model is a multivariate statistical model that is determined by a mixed graph, also known as a path diagram. Our focus is on the…

Statistics Theory · Mathematics 2016-12-20 Mathias Drton

Graph-structured data arise ubiquitously in many application domains. A fundamental problem is to quantify their similarities. Graph kernels are often used for this purpose, which decompose graphs into substructures and compare these…

Machine Learning · Computer Science 2020-03-26 Wei Ye , Zhen Wang , Rachel Redberg , Ambuj Singh

Recently, the deep learning community has given growing attention to neural architectures engineered to learn problems in relational domains. Convolutional Neural Networks employ parameter sharing over the image domain, tying the weights of…

Machine Learning · Computer Science 2019-02-26 Marcelo O. R. Prates , Pedro H. C. Avelar , Henrique Lemos , Marco Gori , Luis Lamb

A clique coloring of a graph is an assignment of colors to its vertices such that no maximal clique is monochromatic. We initiate the study of structural parameterizations of the Clique Coloring problem which asks whether a given graph has…

Data Structures and Algorithms · Computer Science 2020-05-12 Lars Jaffke , Paloma T. Lima , Geevarghese Philip

Processing large complex networks recently attracted considerable interest. Complex graphs are useful in a wide range of applications from technological networks to biological systems like the human brain. Sometimes these networks are…

Data Structures and Algorithms · Computer Science 2019-12-03 Christian Schulz

Point clouds are sets of points in two or three dimensions. Most kernel methods for learning on sets of points have not yet dealt with the specific geometrical invariances and practical constraints associated with point clouds in computer…

Machine Learning · Computer Science 2007-12-21 Francis Bach

In Two-Sets Cut-Uncut, we are given an undirected graph $G=(V,E)$ and two terminal sets $S$ and $T$. The task is to find a minimum cut $C$ in $G$ (if there is any) separating $S$ from $T$ under the following ``uncut'' condition. In the…

Data Structures and Algorithms · Computer Science 2024-08-27 Matthias Bentert , Fedor V. Fomin , Fanny Hauser , Saket Saurabh