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We provide a visualization model that targets the visualization of Protein-Protein Interactions(PPI) and combines it with a super view based on publications and methods to extract interactions. Although there are several existing tools, our…

Information Retrieval · Computer Science 2021-11-29 Melih Sozdinler

The quasipotential is a natural generalization of the concept of energy functions to non-equilibrium systems. In the analysis of rare events in stochastic dynamics, it plays a central role in characterizing the statistics of transition…

Dynamical Systems · Mathematics 2020-12-17 Bo Lin , Qianxiao Li , Weiqing Ren

Exploring causal relationships for qualitative data analysis in HCI and social science research enables the understanding of user needs and theory building. However, current computational tools primarily characterize and categorize…

Human-Computer Interaction · Computer Science 2026-02-09 Han Meng , Qiuyuan Lyu , Peinuan Qin , Yitian Yang , Renwen Zhang , Wen-Chieh Lin , Yi-Chieh Lee

Programming environments have evolved from purely text based to using graphical user interfaces, and now we see a move towards web based interfaces, such as Jupyter. Web based interfaces allow for the creation of interactive documents that…

Programming Languages · Computer Science 2020-01-31 Jan Wielemaker , Fabrizio Riguzzi , Bob Kowalski , Torbjörn Lager , Fariba Sadri , Miguel Calejo

Recent advances in machine learning allow us to analyze and describe the content of high-dimensional data like text, audio, images or other signals. In order to visualize that data in 2D or 3D, usually Dimensionality Reduction (DR)…

Computer Vision and Pattern Recognition · Computer Science 2018-11-26 Dimitris Spathis , Nikolaos Passalis , Anastasios Tefas

The optimization of cooling systems is important in many cases, for example for cabin and battery cooling in electric cars. Such an optimization is governed by multiple, conflicting objectives and it is performed across a multi-dimensional…

Human-Computer Interaction · Computer Science 2025-07-25 Rainer Splechtna , Majid Behravan , Mario Jelovic , Denis Gracanin , Helwig Hauser , Kresimir Matkovic

Performing diagnosis or exploratory analysis during the training of deep learning models is challenging but often necessary for making a sequence of decisions guided by the incremental observations. Currently available systems for this…

Machine Learning · Computer Science 2020-01-08 Shital Shah , Roland Fernandez , Steven Drucker

Traditional visualisations are designed to be shown on a flat surface (screen or page) but most data is not "flat". For example, the surface of the earth exists on a sphere, however, when that surface is presented on a flat map, key…

Human-Computer Interaction · Computer Science 2022-10-25 Kun-Ting Chen

ICE-Talk is an open source web-based GUI that allows the use of a TTS system with controllable parameters via a text field and a clickable 2D plot. It enables the study of latent spaces for controllable TTS. Moreover it is implemented as a…

Audio and Speech Processing · Electrical Eng. & Systems 2020-08-26 Noé Tits , Kevin El Haddad , Thierry Dutoit

Analysis of temporal network data arising from online interactive social experiments is not possible with standard statistical methods because the assumptions of these models, such as independence of observations, are not satisfied. In this…

Applications · Statistics 2019-08-08 Susan C. Fennell , James P. Gleeson , Michael Quayle , Kevin Durrheim , Kevin Burke

Data visualization is by far the most commonly used mechanism to explore data, especially by novice data analysts and data scientists. And yet, current visual analytics tools are rather limited in their ability to guide data scientists to…

Databases · Computer Science 2018-01-16 Tarique Siddiqui , Albert Kim , John Lee , Karrie Karahalios , Aditya Parameswaran

The mapper algorithm is a popular tool from topological data analysis for extracting topological summaries of high-dimensional datasets. In this paper, we present Mapper Interactive, a web-based framework for the interactive analysis and…

Computational Geometry · Computer Science 2021-04-28 Youjia Zhou , Nithin Chalapathi , Archit Rathore , Yaodong Zhao , Bei Wang

Temporal data is information measured in the context of time. This contextual structure provides components that need to be explored to understand the data and that can form the basis of interactions applied to the plots. In multivariate…

Computation · Statistics 2014-12-23 Xiaoyue Cheng , Dianne Cook , Heike Hofmann

We advocate the idea of the natural-language-driven(NLD) simulation to efficiently produce the object interactions between multiple objects in the virtual road scenes, for teaching and testing the autonomous driving systems that should take…

Computer Vision and Pattern Recognition · Computer Science 2023-12-18 Kairui Yang , Zihao Guo , Gengjie Lin , Haotian Dong , Die Zuo , Jibin Peng , Zhao Huang , Zhecheng Xu , Fupeng Li , Ziyun Bai , Di Lin

Scientific Machine Learning (SciML) has advanced recently across many different areas in computational science and engineering. The objective is to integrate data and physics seamlessly without the need of employing elaborate and…

Machine Learning · Computer Science 2023-08-02 Varun Kumar , Leonard Gleyzer , Adar Kahana , Khemraj Shukla , George Em Karniadakis

Large language models (LLMs), such as ChatGPT, have demonstrated outstanding performance in various fields, particularly in natural language understanding and generation tasks. In complex application scenarios, users tend to engage in…

Artificial Intelligence · Computer Science 2023-08-11 Pan Liang , Danwei Ye , Zihao Zhu , Yunchao Wang , Wang Xia , Ronghua Liang , Guodao Sun

Identifying trendline visualizations with desired patterns is a common and fundamental data exploration task. Existing visual analytics tools offer limited flexibility and expressiveness for such tasks, especially when the pattern of…

Databases · Computer Science 2020-01-31 Tarique Siddiqui , Zesheng Wang , Paul Luh , Karrie Karahalios , Aditya Parameswaran

Information visualization is essential in making sense out of large data sets. Often, high-dimensional data are visualized as a collection of points in 2-dimensional space through dimensionality reduction techniques. However, these…

Computational Geometry · Computer Science 2009-07-16 Emden R. Gansner , Yifan Hu , Stephen G. Kobourov

Patterns in temporal data can often be found across different scales, such as days, weeks, and months, making effective visualization of time-based data challenging. Here we propose a new approach for providing focus and context in…

Human-Computer Interaction · Computer Science 2020-06-16 Bryce Morrow , Trevor Manz , Arlene E. Chung , Nils Gehlenborg , David Gotz

Many processes, from gene interaction in biology to computer networks to social media, can be modeled more precisely as temporal hypergraphs than by regular graphs. This is because hypergraphs generalize graphs by extending edges to connect…

Human-Computer Interaction · Computer Science 2021-05-12 Maximilian T. Fischer , Devanshu Arya , Dirk Streeb , Daniel Seebacher , Daniel A. Keim , Marcel Worring