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Despite their widespread success in various domains, Transformer networks have yet to perform well across datasets in the domain of 3D atomistic graphs such as molecules even when 3D-related inductive biases like translational invariance…

Machine Learning · Computer Science 2023-03-01 Yi-Lun Liao , Tess Smidt

As $SE(3)$-equivariant graph neural networks mature as a core tool for 3D atomistic modeling, improving their efficiency, expressivity, and physical consistency has become a central challenge for large-scale applications. In this work, we…

Machine Learning · Computer Science 2026-04-13 Yi-Lun Liao , Alexander J. Hoffman , Sabrina C. Shen , Alexandre Duval , Sam Walton Norwood , Tess Smidt

Equivariant Graph Neural Networks (EGNNs) have become a widely used approach for modeling 3D atomistic systems. However, mainstream architectures face critical scalability bottlenecks due to the explicit construction of geometric features…

Machine Learning · Computer Science 2026-01-26 Lin Huang , Chengxiang Huang , Ziang Wang , Yiyue Du , Chu Wang , Haocheng Lu , Yunyang Li , Xiaoli Liu , Arthur Jiang , Jia Zhang

Equivariant Graph Neural Networks (EGNNs) have demonstrated significant success in modeling microscale systems, including those in chemistry, biology and materials science. However, EGNNs face substantial computational challenges due to the…

Machine Learning · Computer Science 2025-11-04 Yunyang Li , Lin Huang , Zhihao Ding , Chu Wang , Xinran Wei , Han Yang , Zun Wang , Chang Liu , Yu Shi , Peiran Jin , Tao Qin , Mark Gerstein , Jia Zhang

Graph neural networks that model 3D data, such as point clouds or atoms, are typically desired to be $SO(3)$ equivariant, i.e., equivariant to 3D rotations. Unfortunately equivariant convolutions, which are a fundamental operation for…

Machine Learning · Computer Science 2023-06-16 Saro Passaro , C. Lawrence Zitnick

Graph Transformer has demonstrated impressive capabilities in the field of graph representation learning. However, existing approaches face two critical challenges: (1) most models suffer from exponentially increasing computational…

Deploying 3D graph neural networks (GNNs) that are equivariant to 3D rotations (the group SO(3)) on edge devices is challenging due to their high computational cost. This paper addresses the problem by compressing and accelerating an…

Machine Learning · Computer Science 2026-03-04 Haoyu Zhou , Ping Xue , Hao Zhang , Tianfan Fu

We introduce the SE(3)-Transformer, a variant of the self-attention module for 3D point clouds and graphs, which is equivariant under continuous 3D roto-translations. Equivariance is important to ensure stable and predictable performance in…

Machine Learning · Computer Science 2020-11-26 Fabian B. Fuchs , Daniel E. Worrall , Volker Fischer , Max Welling

This paper proposes a convolution structure for learning SE(3)-equivariant features from 3D point clouds. It can be viewed as an equivariant version of kernel point convolutions (KPConv), a widely used convolution form to process point…

Computer Vision and Pattern Recognition · Computer Science 2023-06-16 Minghan Zhu , Maani Ghaffari , William A. Clark , Huei Peng

Learning representations on large-sized graphs is a long-standing challenge due to the inter-dependence nature involved in massive data points. Transformers, as an emerging class of foundation encoders for graph-structured data, have shown…

Machine Learning · Computer Science 2024-08-19 Qitian Wu , Wentao Zhao , Chenxiao Yang , Hengrui Zhang , Fan Nie , Haitian Jiang , Yatao Bian , Junchi Yan

Transformers are built upon multi-head scaled dot-product attention and positional encoding, which aim to learn the feature representations and token dependencies. In this work, we focus on enhancing the distinctive representation by…

Computer Vision and Pattern Recognition · Computer Science 2022-07-12 Litao Yu , Jian Zhang

Rotation equivariance is a desirable property in many practical applications such as motion forecasting and 3D perception, where it can offer benefits like sample efficiency, better generalization, and robustness to input perturbations.…

Computer Vision and Pattern Recognition · Computer Science 2023-01-26 Serge Assaad , Carlton Downey , Rami Al-Rfou , Nigamaa Nayakanti , Ben Sapp

Accurate prediction of small molecule solubility using material-sparing approaches is critical for accelerating synthesis and process optimization, yet experimental measurement is costly and many learning approaches either depend on…

Features that are equivariant to a larger group of symmetries have been shown to be more discriminative and powerful in recent studies. However, higher-order equivariant features often come with an exponentially-growing computational cost.…

Computer Vision and Pattern Recognition · Computer Science 2021-04-05 Haiwei Chen , Shichen Liu , Weikai Chen , Hao Li

Computational high-throughput studies, especially in research on high-entropy materials and catalysts, are hampered by high-dimensional composition spaces and myriad structural microstates. They present bottlenecks to the conventional use…

Materials Science · Physics 2024-03-18 Christian M. Clausen , Jan Rossmeisl , Zachary W. Ulissi

In this work, we present Eformer - Edge enhancement based transformer, a novel architecture that builds an encoder-decoder network using transformer blocks for medical image denoising. Non-overlapping window-based self-attention is used in…

Image and Video Processing · Electrical Eng. & Systems 2021-11-10 Achleshwar Luthra , Harsh Sulakhe , Tanish Mittal , Abhishek Iyer , Santosh Yadav

This paper does not attempt to design a state-of-the-art method for visual recognition but investigates a more efficient way to make use of convolutions to encode spatial features. By comparing the design principles of the recent…

Computer Vision and Pattern Recognition · Computer Science 2022-11-23 Qibin Hou , Cheng-Ze Lu , Ming-Ming Cheng , Jiashi Feng

Vision transformer based models bring significant improvements for image segmentation tasks. Although these architectures offer powerful capabilities irrespective of specific segmentation tasks, their use of computational resources can be…

Computer Vision and Pattern Recognition · Computer Science 2026-04-01 Manyi Yao , Abhishek Aich , Yumin Suh , Amit Roy-Chowdhury , Christian Shelton , Manmohan Chandraker

Transformers have emerged as the state-of-the-art architecture in medical image registration, outperforming convolutional neural networks (CNNs) by addressing their limited receptive fields and overcoming gradient instability in deeper…

Computer Vision and Pattern Recognition · Computer Science 2024-12-03 Abu Zahid Bin Aziz , Mokshagna Sai Teja Karanam , Tushar Kataria , Shireen Y. Elhabian

The adoption of Vision Transformers (ViTs) based architectures represents a significant advancement in 3D Medical Image (MI) segmentation, surpassing traditional Convolutional Neural Network (CNN) models by enhancing global contextual…

Computer Vision and Pattern Recognition · Computer Science 2024-04-25 Shehan Perera , Pouyan Navard , Alper Yilmaz
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