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We extend an existing approach for efficient use of shared mapped memory across Chapel and C++ for graph data stored as 1-D arrays to sparse tensor data stored using a combination of 2-D and 1-D arrays. We describe the specific extensions…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-10-18 S. Isaac Geronimo Anderson , Daniel M. Dunlavy

In this paper, the author presents a simple and fast C++ thread pool implementation capable of running task graphs. The implementation is publicly available on GitHub, see https://github.com/dpuyda/scheduling.

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-24 Dmytro Puyda

Summary: The development of automated servers to predict the three-dimensional structure of proteins has seen much progress over the years. These servers make modeling simpler, but largely exclude users from the process. We present an…

Biomolecules · Quantitative Biology 2017-02-08 Rowan Hatherley , David K. Brown , Özlem Tastan Bishop

The numba-mpi package offers access to the Message Passing Interface (MPI) routines from Python code that uses the Numba just-in-time (JIT) compiler. As a result, high-performance and multi-threaded Python code may utilize MPI communication…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-08 Kacper Derlatka , Maciej Manna , Oleksii Bulenok , David Zwicker , Sylwester Arabas

Heterogeneous clusters with nodes containing one or more accelerators, such as GPUs, have become common. While MPI provides inter-address space communication, and OpenCL provides a process with access to heterogeneous computational…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-09-19 Hyun Dok Cho , Okwan Kwon , Samuel P. Midkiff

We present MPWide, a platform independent communication library for performing message passing between computers. Our library allows coupling of several local MPI applications through a long distance network and is specifically optimized…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-08-18 Derek Groen , Steven Rieder , Paola Grosso , Cees de Laat , Simon Portegies Zwart

This paper describes the implementation and evaluation of an operating system module, the Congestion Manager (CM), which provides integrated network flow management and exports a convenient programming interface that allows applications to…

Networking and Internet Architecture · Computer Science 2007-05-23 David G. Andersen , Deepak Bansal , Dorothy Curtis , Srinivasan Seshan , Hari Balakrishnan

This paper introduces a new C++/CUDA library for GPU-accelerated stochastic optimization called MPPI-Generic. It provides implementations of Model Predictive Path Integral control, Tube-Model Predictive Path Integral Control, and Robust…

Mathematical Software · Computer Science 2026-02-26 Bogdan Vlahov , Jason Gibson , Manan Gandhi , Evangelos A. Theodorou

Pipeline is a fundamental parallel programming pattern. Mainstream pipeline programming frameworks count on data abstractions to perform pipeline scheduling. This design is convenient for data-centric pipeline applications but inefficient…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-02-03 Cheng-Hsiang Chiu , Tsung-Wei Huang , Zizheng Guo , Yibo Lin

Dataset storage, exchange, and access play a critical role in scientific applications. For such purposes netCDF serves as a portable and efficient file format and programming interface, which is popular in numerous scientific application…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 Jianwei Li , Wei-keng Liao , Alok Choudhary , Robert Ross , Rajeev Thakur , William Gropp , Rob Latham

Parallel input performance issues are often neglected in large scale parallel applications in Computational Science and Engineering. Traditionally, there has been less focus on input performance because either input sizes are small (as in…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-12-02 Mathew Jacob , Maya Taylor , Laxmikant Kale

Asynchronous programming models (APM) are gaining more and more traction, allowing applications to expose the available concurrency to a runtime system tasked with coordinating the execution. While MPI has long provided support for…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-23 Joseph Schuchart , Christoph Niethammer , José Gracia

Message logging protocols are enablers of local rollback, a more efficient alternative to global rollback, for fault tolerant MPI applications. Until now, message logging MPI implementations have incurred the overheads of a redesign and…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-09 Kiril Dichev , Dimitrios S. Nikolopoulos

Dynamic scaling aims to elastically change the number of processes during runtime to tune the performance of the distributed applications. This report briefly presents a performance evaluation of MPI process provisioning / de-provisioning…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-01-01 Masatoshi Hanai , Georgios Theodoropoulos

When implementing functionality which requires sparse matrices, there are numerous storage formats to choose from, each with advantages and disadvantages. To achieve good performance, several formats may need to be used in one program,…

Mathematical Software · Computer Science 2019-10-22 Conrad Sanderson , Ryan Curtin

This work presents experience with traditional use cases of checkpointing on a novel platform. A single codebase (MANA) transparently checkpoints production workloads for major available MPI implementations: "develop once, run everywhere".…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-27 Yao Xu , Leonid Belyaev , Twinkle Jain , Derek Schafer , Anthony Skjellum , Gene Cooperman

Motivated by the increasing shift to multicore computers, recent work has developed language support for responsive parallel applications that mix compute-intensive tasks with latency-sensitive, usually interactive, tasks. These…

Programming Languages · Computer Science 2020-04-07 Stefan K. Muller , Kyle Singer , Noah Goldstein , Umut A. Acar , Kunal Agrawal , I-Ting Angelina Lee

Programming embedded systems applications involve writing concurrent, event-driven and timing-aware programs. Traditionally, such programs are written in low-level machine-oriented programming languages like C or Assembly. We present an…

Programming Languages · Computer Science 2024-01-17 Abhiroop Sarkar , Bo Joel Svensson , Mary Sheeran

The evaluation of one-loop matrix elements is one of the main bottlenecks in precision calculations for the high-luminosity phase of the Large Hadron Collider. To alleviate this problem, a new C++ interface to the MCFM parton-level Monte…

High Energy Physics - Phenomenology · Physics 2022-01-05 John M Campbell , Stefan Höche , Christian T Preuss

Object-oriented programming languages such as Java and Objective C have become popular for implementing agent-based and other object-based simulations since objects in those languages can {\em reflect} (i.e. make runtime queries of an…

Mathematical Software · Computer Science 2008-10-22 Russell K. Standish , Duraid Madina
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