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Distances are pervasive in machine learning. They serve as similarity measures, loss functions, and learning targets; it is said that a good distance measure solves a task. When defining distances, the triangle inequality has proven to be a…

Machine Learning · Computer Science 2020-07-08 Silviu Pitis , Harris Chan , Kiarash Jamali , Jimmy Ba

Topological data analysis (TDA) detects geometric structure in biological data. However, many TDA algorithms are memory intensive and impractical for massive datasets. Here, we introduce a statistical protocol that reduces TDA's memory…

Quantitative Methods · Quantitative Biology 2025-09-05 Andrew J. Stier , Naichen Shi , Raed Al Kontar , Chad Giusti , Marc G. Berman

Empirically, Deep Learning (DL) has demonstrated unprecedented success in practical applications. However, DL remains by and large a mysterious "black-box", spurring recent theoretical research to build its mathematical foundations. In this…

Machine Learning · Computer Science 2025-01-22 Jwo-Yuh Wu , Liang-Chi Huang , Wen-Hsuan Li , Chun-Hung Liu

In recent years there has been noticeable interest in the study of the "shape of data". Among the many ways a "shape" could be defined, topology is the most general one, as it describes an object in terms of its connectivity structure:…

Machine Learning · Statistics 2017-09-22 Tullia Padellini , Pierpaolo Brutti

This research uses deep learning to estimate the topology of manifolds represented by sparse, unordered point cloud scenes in 3D. A new labelled dataset was synthesised to train neural networks and evaluate their ability to estimate the…

Computer Vision and Pattern Recognition · Computer Science 2023-10-02 Dylan Peek , Matt P. Skerritt , Stephan Chalup

Grassmannian manifold offers a powerful carrier for geometric representation learning by modelling high-dimensional data as low-dimensional subspaces. However, existing approaches predominantly rely on static single-subspace…

Computer Vision and Pattern Recognition · Computer Science 2026-03-18 Xuan Yu , Tianyang Xu

Graph neural networks excel at modeling pairwise interactions, but they cannot flexibly accommodate higher-order interactions and features. Topological deep learning (TDL) has emerged recently as a promising tool for addressing this issue.…

Machine Learning · Computer Science 2025-02-07 Claudio Battiloro , Ege Karaismailoğlu , Mauricio Tec , George Dasoulas , Michelle Audirac , Francesca Dominici

Generative models that produce point clouds have emerged as a powerful tool to represent 3D surfaces, and the best current ones rely on learning an ensemble of parametric representations. Unfortunately, they offer no control over the…

Computer Vision and Pattern Recognition · Computer Science 2019-11-27 Jan Bednarik , Shaifali Parashar , Erhan Gundogdu , Mathieu Salzmann , Pascal Fua

Persistent homology is a powerful tool for characterizing the topology of a data set at various geometric scales. When applied to the description of molecular structures, persistent homology can capture the multiscale geometric features and…

Quantitative Methods · Quantitative Biology 2018-07-31 Zixuan Cang , Guo-Wei Wei

Comparing networks is essential for a number of downstream tasks, from clustering to anomaly detection. Despite higher-order interactions being critical for understanding the dynamics of complex systems, traditional approaches for network…

Physics and Society · Physics 2025-11-03 Helcio Felippe , Alec Kirkley , Federico Battiston

We present a novel set of rigorous and computationally efficient topology-based complexity notions that exhibit a strong correlation with the generalization gap in modern deep neural networks (DNNs). DNNs show remarkable generalization…

Machine Learning · Computer Science 2024-12-17 Rayna Andreeva , Benjamin Dupuis , Rik Sarkar , Tolga Birdal , Umut Şimşekli

Balancing performance trade-off on long-tail (LT) data distributions remains a long-standing challenge. In this paper, we posit that this dilemma stems from a phenomenon called "tail performance degradation" (the model tends to severely…

Computer Vision and Pattern Recognition · Computer Science 2026-03-24 Shenghan Chen , Yiming Liu , Yanzhen Wang , Yujia Wang , Xiankai Lu

To address the challenges of long-tailed classification, researchers have proposed several approaches to reduce model bias, most of which assume that classes with few samples are weak classes. However, recent studies have shown that tail…

Computer Vision and Pattern Recognition · Computer Science 2024-12-03 Yanbiao Ma , Licheng Jiao , Fang Liu , Maoji Wen , Lingling Li , Wenping Ma , Shuyuan Yang , Xu Liu , Puhua Chen

Despite being able to capture a range of features of the data, high accuracy models trained with supervision tend to make similar predictions. This seemingly implies that high-performing models share similar biases regardless of training…

Machine Learning · Computer Science 2022-04-27 Raphael Gontijo-Lopes , Yann Dauphin , Ekin D. Cubuk

The language and methods of algebraic topology, particularly homotopy theory, have been extensively used in the study of the identification, the classification and the evolution of defects. Topological methods provide the means for the…

High Energy Physics - Phenomenology · Physics 2007-05-23 E. D. M. Kavoussanaki

Two important tasks in the field of Topological Data Analysis are building practical multifiltrations on objects and using TDA to detect the geometry. Motivated by the tasks, we build multiparameter filtrations by operators on images named…

Computer Vision and Pattern Recognition · Computer Science 2024-11-28 Jiaxing He , Bingzhe Hou , Tieru Wu , Yue Xin

A primary hypothesis that drives scientific and engineering studies is that data has structure. The dominant paradigms for describing such structure are statistics (e.g., moments, correlation functions) and signal processing (e.g.,…

Algebraic Topology · Mathematics 2020-11-11 Alexander D. Smith , Pawel Dlotko , Victor M. Zavala

In many scenarios, especially biomedical applications, the correct delineation of complex fine-scaled structures such as neurons, tissues, and vessels is critical for downstream analysis. Despite the strong predictive power of deep learning…

Computer Vision and Pattern Recognition · Computer Science 2024-03-25 Xiaoling Hu

Despite being the workhorse of deep learning, the backpropagation algorithm is no panacea. It enforces sequential layer updates, thus preventing efficient parallelization of the training process. Furthermore, its biological plausibility is…

Machine Learning · Statistics 2021-02-18 Julien Launay , Iacopo Poli , François Boniface , Florent Krzakala

Recently, there has been an explosion in statistical learning literature to represent data using topological principles to capture structure and relationships. We propose a topological data analysis (TDA)-based framework, named Topological…

Machine Learning · Statistics 2025-11-10 Jordan Eckert , Elvan Ceyhan , Henry Schenck