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We systematically explore the self-assembly of semi-flexible polymers in deformable spherical confinement across a wide regime of chain stiffness, contour lengths and packing fractions by means of coarse-grained molecular dynamics…

Soft Condensed Matter · Physics 2021-07-12 Maxime M. C. Tortora , Daniel Jost

Moir\'e superlattice systems such as transition metal dichalcogenide heterobilayers have garnered significant recent interest due to their promising utility as tunable solid state simulators. Recent experiments on a WSe$_2$/WS$_2$…

Strongly Correlated Electrons · Physics 2022-12-14 Michael Matty , Eun-Ah Kim

We analyze the sedimentation behavior of a polydisperse two-dimensional liquid-crystal fluid using a local density functional theory based on scaled particle theory. Polydispersity is incorporated through variations in the roundness of hard…

Soft Condensed Matter · Physics 2025-11-11 Tobias Eckert , Daniel de las Heras , Enrique Velasco , Yuri Martínez-Ratón

Triadic interactions are special types of higher-order interactions that occur when regulator nodes modulate the interactions between other two or more nodes. In presence of triadic interactions, a percolation process occurring on a…

Adaptation and Self-Organizing Systems · Physics 2026-02-03 Hanlin Sun , Filippo Radicchi , Ginestra Bianconi

Bundles of stiff filaments are ubiquitous in the living world, found both in the cytoskeleton and in the extracellular medium. These bundles are typically held together by smaller cross-linking molecules. We demonstrate analytically,…

We propose that semiflexible polymers in poor solvent collapse in two stages. The first stage is the well known formation of a dense toroidal aggregate. However, if the solvent is sufficiently poor, the condensate will undergo a second…

Soft Condensed Matter · Physics 2009-11-10 Igor M. Kulic , Denis Andrienko , Markus Deserno

Intercellular exchange networks are essential for the adaptive capabilities of populations of cells. While diffusional exchanges have traditionally been difficult to map, recent advances in nanotechnology enable precise probing of exchange…

Statistical Mechanics · Physics 2024-12-13 Luís C. F. Latoski , Andrea De Martino , Daniele De Martino

By means of extensive replica-exchange simulations of generic coarse-grained models for helical polymers, we systematically investigate the structural transitions into all possible helical phases for flexible and semiflexible elastic…

Biological Physics · Physics 2015-09-23 Matthew J. Williams , Michael Bachmann

The dualism between superconductivity and charge/spin modulations (the so-called stripes) dominates the phase diagram of many strongly-correlated systems. A prominent example is given by the Hubbard model, where these phases compete and…

Strongly Correlated Electrons · Physics 2019-08-14 Luca F. Tocchio , Arianna Montorsi , Federico Becca

Immotile microbes inhabit nearly every environment on Earth, from soils and sediments to food matrices -- yet how they disperse through these physically confining environments is poorly understood. Here, we show that immotile microbial…

Disclination lines in three-dimensional nematic liquid crystals generically form closed loops whose topology is classified by homotopy theory. While this classification successfully captures global topological features, it does not encode…

Soft Condensed Matter · Physics 2026-05-27 F. Aprile , A. J. H. Houston , G. Gonnella , D. Marenduzzo , T. N. Shendruk , G. Negro

Harnessing the topology of ring polymers as a design motif in functional nanomaterials is becoming a promising direction in the field of soft matter. For example, the ring topology of DNA plasmids prevents the relaxation of excess twist…

Soft Condensed Matter · Physics 2026-04-29 Roman Staňo , Renáta Rusková , Dušan Račko , Jan Smrek

Superconductivity (SC) may microscopically coexist with density wave (DW) when the nesting of the Fermi surface (FS) is not perfect. There are, at least, two possible microscopic structures of a DW state with quasi-particle states remaining…

Superconductivity · Physics 2008-11-27 P. D. Grigoriev

Superdiffusion is an anomalous transport behavior. Recently, a new mechanism, termed the ``nodal mechanism," has been proposed to induce superdiffusion in quantum models. However, existing realizations of the nodal mechanism have so far…

Mesoscale and Nanoscale Physics · Physics 2025-11-14 Shaofeng Huang , Yu-Peng Wang , Jie Ren , Chen Fang

We introduce a method for predicting RNA folding pathways, with an application to the most important RNA tetraloops. The method is based on the idea that ensembles of three-dimensional fragments extracted from high-resolution crystal…

Biomolecules · Quantitative Biology 2016-11-21 Sandro Bottaro , Alejandro Gil-Ley , Giovanni Bussi

Simulating percolation and critical phenomena of labelled species inside films composed of single-component linear homogeneous macromolecules using molecular Monte Carlo method in 3 dimensions, we study dependence of these conducting…

Soft Condensed Matter · Physics 2019-09-05 Yuki Norizoe , Hiroshi Morita

This work unravels the atomic details of the interaction of solute atoms with nanoscale crystalline defects. The complexity of this phenomenon is elucidated through detailed atom probe tomographic investigations on epitaxially-strained,…

Materials Science · Physics 2021-12-22 Samik Mukherjee , Simone Assali , Oussama Moutanabbir

This work explores the morphology and dynamical properties of cores within rich superclusters, highlighting their role as transitional structures in the large-scale structure of the Universe. Using projected and radial velocity…

Cosmology and Nongalactic Astrophysics · Physics 2025-09-18 J. M. Zúñiga , C. A. Caretta , H. Andernach

Growing experimental evidence indicates that topological defects could serve as organizing centers in the morphogenesis of tissues. Here, we provide a quantitative explanation for this phenomenon, rooted in the buckling theory of deformable…

Soft Condensed Matter · Physics 2022-04-21 Ludwig A. Hoffmann , Livio Nicola Carenza , Julia Eckert , Luca Giomi

Polymer-coated pores play a crucial role in nucleo-cytoplasmic transport and in a number of biomimetic and nanotechnological applications. Here we present Monte Carlo and Density Functional Theory approaches to identify different collective…

Soft Condensed Matter · Physics 2015-05-30 Dino Osmanovic , Joe Bailey , Anthony H. Harker , Ariberto Fassati , Bart W. Hoogenboom , Ian J. Ford