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Research into deep learning models for molecular property prediction has primarily focused on the development of better Graph Neural Network (GNN) architectures. Though new GNN variants continue to improve performance, their modifications…

Quantitative Methods · Quantitative Biology 2021-11-23 Toni Sagayaraj , Carsten Eickhoff

Large Language Models (LLMs) demonstrate strong reasoning abilities but face limitations such as hallucinations and outdated knowledge. Knowledge Graph (KG)-based Retrieval-Augmented Generation (RAG) addresses these issues by grounding LLM…

Computation and Language · Computer Science 2025-03-04 Mufei Li , Siqi Miao , Pan Li

Due to the presence of the natural gap between Knowledge Graph (KG) structures and the natural language, the effective integration of holistic structural information of KGs with Large Language Models (LLMs) has emerged as a significant…

Computation and Language · Computer Science 2025-01-31 Qika Lin , Tianzhe Zhao , Kai He , Zhen Peng , Fangzhi Xu , Ling Huang , Jingying Ma , Mengling Feng

A fundamental task for knowledge graphs (KGs) is knowledge graph completion (KGC). It aims to predict unseen edges by learning representations for all the entities and relations in a KG. A common concern when learning representations on…

Machine Learning · Computer Science 2023-02-13 Harry Shomer , Wei Jin , Wentao Wang , Jiliang Tang

Leveraging Large Language Models (LLMs) for Knowledge Graph Completion (KGC) is promising but hindered by a fundamental granularity mismatch. LLMs operate on fragmented token sequences, whereas entities are the fundamental units in…

Computation and Language · Computer Science 2026-02-27 Siyue Su , Jian Yang , Bo Li , Guanglin Niu

The graph structure is a commonly used data storage mode, and it turns out that the low-dimensional embedded representation of nodes in the graph is extremely useful in various typical tasks, such as node classification, link prediction ,…

Social and Information Networks · Computer Science 2020-08-03 Xing Li , Wei Wei , Xiangnan Feng , Xue Liu , Zhiming Zheng

We propose two new methods for multi-document financial question answering. First, a method that uses semantic tagging, and then, queries the index to get the context (RAG_SEM). And second, a Knowledge Graph (KG_RAG) based method that uses…

Information Retrieval · Computer Science 2024-11-13 Shalin Shah , Srikanth Ryali , Ramasubbu Venkatesh

Multi-hop query answering over a Knowledge Graph (KG) involves traversing one or more hops from the start node to answer a query. Path-based and logic-based methods are state-of-the-art for multi-hop question answering. The former is used…

Artificial Intelligence · Computer Science 2025-06-12 Mayank Kharbanda , Rajiv Ratn Shah , Raghava Mutharaju

Reasoning, the ability to logically draw conclusions from existing knowledge, is a hallmark of human. Together with perception, they constitute the two major themes of artificial intelligence. While deep learning has pushed the limit of…

Artificial Intelligence · Computer Science 2024-10-18 Zhaocheng Zhu

Knowledge graphs (KGs) that modelings the world knowledge as structural triples are inevitably incomplete. Such problems still exist for multimodal knowledge graphs (MMKGs). Thus, knowledge graph completion (KGC) is of great importance to…

Artificial Intelligence · Computer Science 2022-09-16 Yichi Zhang , Wen Zhang

Autoregressive large language models (LLMs) pre-trained by next token prediction are inherently proficient in generative tasks. However, their performance on knowledge-driven tasks such as factual knowledge querying remains unsatisfactory.…

Computation and Language · Computer Science 2026-01-14 Peng Yu , Cheng Deng , Beiya Dai , Xinbing Wang , Ying Wen

Representation learning on graphs has been gaining attention due to its wide applicability in predicting missing links, and classifying and recommending nodes. Most embedding methods aim to preserve certain properties of the original graph…

Social and Information Networks · Computer Science 2019-09-13 Palash Goyal , Di Huang , Sujit Rokka Chhetri , Arquimedes Canedo , Jaya Shree , Evan Patterson

Answering logical queries on knowledge graphs (KG) poses a significant challenge for machine reasoning. The primary obstacle in this task stems from the inherent incompleteness of KGs. Existing research has predominantly focused on…

Machine Learning · Computer Science 2024-03-20 Zezhong Xu , Peng Ye , Lei Liang , Huajun Chen , Wen Zhang

Knowledge graph (KG) embeddings learn low-dimensional representations of entities and relations to predict missing facts. KGs often exhibit hierarchical and logical patterns which must be preserved in the embedding space. For hierarchical…

Machine Learning · Computer Science 2020-05-05 Ines Chami , Adva Wolf , Da-Cheng Juan , Frederic Sala , Sujith Ravi , Christopher Ré

Answering complex questions often requires reasoning over knowledge graphs (KGs). State-of-the-art methods often utilize entities in questions to retrieve local subgraphs, which are then fed into KG encoder, e.g. graph neural networks…

Computation and Language · Computer Science 2023-05-31 Shiyang Li , Yifan Gao , Haoming Jiang , Qingyu Yin , Zheng Li , Xifeng Yan , Chao Zhang , Bing Yin

Knowledge graphs are essential for numerous downstream natural language processing applications, but are typically incomplete with many facts missing. This results in research efforts on multi-hop reasoning task, which can be formulated as…

Artificial Intelligence · Computer Science 2021-09-03 Yao Zhang , Hongru Liang , Adam Jatowt , Wenqiang Lei , Xin Wei , Ning Jiang , Zhenglu Yang

Integrating large language models (LLMs) with knowledge graphs derived from domain-specific data represents an important advancement towards more powerful and factual reasoning. As these models grow more capable, it is crucial to enable…

Artificial Intelligence · Computer Science 2024-04-19 Stefan Dernbach , Khushbu Agarwal , Alejandro Zuniga , Michael Henry , Sutanay Choudhury

Gaussian Processes (GPs) are known to provide accurate predictions and uncertainty estimates even with small amounts of labeled data by capturing similarity between data points through their kernel function. However traditional GP kernels…

Machine Learning · Computer Science 2021-11-16 Ankur Mallick , Chaitanya Dwivedi , Bhavya Kailkhura , Gauri Joshi , T. Yong-Jin Han

In this work, we propose variations of a Gaussian mixture model (GMM) based channel estimator that was recently proven to be asymptotically optimal in the minimum mean square error (MMSE) sense. We account for the need of low computational…

Information Theory · Computer Science 2023-06-06 Benedikt Fesl , Michael Joham , Sha Hu , Michael Koller , Nurettin Turan , Wolfgang Utschick

Link prediction is critical for the application of incomplete knowledge graph (KG) in the downstream tasks. As a family of effective approaches for link predictions, embedding methods try to learn low-rank representations for both entities…

Computation and Language · Computer Science 2019-11-22 Canran Xu , Ruijiang Li
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