Related papers: On the $k$-Hamming and $k$-Edit Distances
The normalized edit distance is one of the distances derived from the edit distance. It is useful in some applications because it takes into account the lengths of the two strings compared. The normalized edit distance is not defined in…
Given a graph, the general problem to cover the maximum number of vertices by a collection of vertex-disjoint long paths seemingly escapes from the literature. A path containing at least $k$ vertices is considered long. When $k \le 3$, the…
We prove that the problem of deciding the consequence relation of the full Lambek calculus with weakening is complete for the class HAck of hyper-Ackermannian problems (i.e., level F_{\omega}^{\omega} of the ordinal-indexed hierarchy of…
In the $k$-cut problem, we are given an edge-weighted graph $G$ and an integer $k$, and have to remove a set of edges with minimum total weight so that $G$ has at least $k$ connected components. The current best algorithms are an…
We study the complexity of the classic capacitated k-median and k-means problems parameterized by the number of centers, k. These problems are notoriously difficult since the best known approximation bound for high dimensional Euclidean…
The $k$-mismatch problem consists in computing the Hamming distance between a pattern $P$ of length $m$ and every length-$m$ substring of a text $T$ of length $n$, if this distance is no more than $k$. In many real-world applications, any…
In computational biology, $k$-mers and edit distance are fundamental concepts. However, little is known about the metric space of all $k$-mers equipped with the edit distance. In this work, we explore the structure of the $k$-mer space by…
In this paper we consider several variants of the pattern matching problem. In particular, we investigate the following problems: 1) Pattern matching with k mismatches; 2) Approximate counting of mismatches; and 3) Pattern matching with…
The (unweighted) tree edit distance problem for $n$ node trees asks to compute a measure of dissimilarity between two rooted trees with node labels. The current best algorithm from more than a decade ago runs in $O(n ^ 3)$ time [Demaine,…
Kitchloo and Morava give a strikingly simple picture of elliptic cohomology at the Tate curve by studying a completed version of $S^1$-equivariant $K$-theory for spaces. Several authors (cf [ABG],[KM],[L]) have suggested that an equivariant…
The edit distance between two words $w_1, w_2$ is the minimal number of word operations (letter insertions, deletions, and substitutions) necessary to transform $w_1$ to $w_2$. The edit distance generalizes to languages $\mathcal{L}_1,…
Hawking's local rigidity theorem, proven in the smooth setting by Alexakis-Ionescu-Klainerman, says that the event horizon of any stationary non-extremal black hole is a non-degenerate Killing horizon. In this paper, we prove that the full…
Associated to any finite metric space are a large number of objects and quantities which provide some degree of structural or geometric information about the space. In this paper we show that in the setting of subsets of weighted Hamming…
This report introduces and investigates a family of metrics on sets of pointed Kripke models. The metrics are generalizations of the Hamming distance applicable to countably infinite binary strings and, by extension, logical theories or…
In this paper, we provide a method for determining the asymptotic value of the maximum edit distance from a given hereditary property. This method permits the edit distance to be computed without using Szemer\'edi's Regularity Lemma…
In this work we define a novel edit distance for trees considered with some abstract weights on the edges. The metric is driven by the idea of considering trees as topological summaries in the context of persistence and topological data…
We present a parameterized dichotomy for the \textsc{$k$-Sparsest Cut} problem in weighted and unweighted versions. In particular, we show that the weighted \textsc{$k$-Sparsest Cut} problem is NP-hard for every $k\geq 3$ even on graphs…
In this note we show that the minimum distance of a linear code equals one plus the smallest shift in the first step of the minimal graded free resolution of the Orlik-Terao algebra (i.e., the initial degree of the Orlik-Tearo ideal)…
The advances of modern localization techniques and the wide spread of mobile devices have provided us great opportunities to collect and mine human mobility trajectories. In this work, we focus on passively collected trajectories, which are…
Distance geometry explores the properties of distance spaces that can be exactly represented as the pairwise Euclidean distances between points in $\mathbb{R}^d$ ($d \geq 1$), or equivalently, distance spaces that can be isometrically…