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In practice, many medical datasets have an underlying taxonomy defined over the disease label space. However, existing classification algorithms for medical diagnoses often assume semantically independent labels. In this study, we aim to…

Computer Vision and Pattern Recognition · Computer Science 2022-09-14 Zhen Yu , Toan Nguyen , Yaniv Gal , Lie Ju , Shekhar S. Chandra , Lei Zhang , Paul Bonnington , Victoria Mar , Zhiyong Wang , Zongyuan Ge

Learning embeddings of entities and relations existing in knowledge bases allows the discovery of hidden patterns in data. In this work, we examine the geometrical space's contribution to the task of knowledge base completion. We focus on…

Computation and Language · Computer Science 2019-08-20 Prodromos Kolyvakis , Alexandros Kalousis , Dimitris Kiritsis

The hyperbolic manifold is a smooth manifold of negative constant curvature. While the hyperbolic manifold is well-studied in the literature, it has gained interest in the machine learning and natural language processing communities lately…

Machine Learning · Computer Science 2019-03-19 Pratik Jawanpuria , Mayank Meghwanshi , Bamdev Mishra

Hyperbolic representation learning is well known for its ability to capture hierarchical information. However, the distance between samples from different levels of hierarchical classes can be required large. We reveal that the hyperbolic…

Machine Learning · Computer Science 2024-10-30 Kun Song , Ruben Solozabal , Li hao , Lu Ren , Moloud Abdar , Qing Li , Fakhri Karray , Martin Takac

We consider the task of inferring is-a relationships from large text corpora. For this purpose, we propose a new method combining hyperbolic embeddings and Hearst patterns. This approach allows us to set appropriate constraints for…

Computation and Language · Computer Science 2019-02-05 Matt Le , Stephen Roller , Laetitia Papaxanthos , Douwe Kiela , Maximilian Nickel

Hyperbolic representations are effective in modeling knowledge graph data which is prevalently used to facilitate multi-hop reasoning. However, a rigorous and detailed comparison of the two spaces for this task is lacking. In this paper,…

Computation and Language · Computer Science 2025-07-08 Simon Welz , Lucie Flek , Akbar Karimi

Hyperbolic deep learning has become a growing research direction in computer vision due to the unique properties afforded by the alternate embedding space. The negative curvature and exponentially growing distance metric provide a natural…

Computer Vision and Pattern Recognition · Computer Science 2026-02-10 Ahmad Bdeir , Johannes Burchert , Lars Schmidt-Thieme , Niels Landwehr

Current approaches to genomic sequence modeling often struggle to align the inductive biases of machine learning models with the evolutionarily-informed structure of biological systems. To this end, we formulate a novel application of…

Machine Learning · Computer Science 2025-07-30 Raiyan R. Khan , Philippe Chlenski , Itsik Pe'er

Learning the representation of data with hierarchical structures in the hyperbolic space attracts increasing attention in recent years. Due to the constant negative curvature, the hyperbolic space resembles tree metrics and captures the…

Machine Learning · Computer Science 2022-02-21 Huiru Xiao , Caigao Jiang , Yangqiu Song , James Zhang , Junwu Xiong

Spatial Transcriptomics (ST) merges the benefits of pathology images and gene expression, linking molecular profiles with tissue structure to analyze spot-level function comprehensively. Predicting gene expression from histology images is a…

Computer Vision and Pattern Recognition · Computer Science 2025-12-01 Chen Zhang , Yilu An , Ying Chen , Hao Li , Xitong Ling , Lihao Liu , Junjun He , Yuxiang Lin , Zihui Wang , Rongshan Yu

In large-scale recommender systems, the user-item networks are generally scale-free or expand exponentially. The latent features (also known as embeddings) used to describe the user and item are determined by how well the embedding space…

Information Retrieval · Computer Science 2022-05-31 Menglin Yang , Min Zhou , Jiahong Liu , Defu Lian , Irwin King

Incomplete Multi-View Clustering (IMVC) faces the challenge of learning discriminative representations from fragmentary observations while maintaining robustness against missing views. However, prevalent Euclidean-based methods suffer from…

Machine Learning · Computer Science 2026-04-21 Tianyi Chen , Haobo Wang , Kai Tang , Gengyu Lyu , Tianlei Hu , Gang Chen , Hong Ma , Meixiang Xiang

Electronic Health Records (EHR) have been heavily used in modern healthcare systems for recording patients' admission information to hospitals. Many data-driven approaches employ temporal features in EHR for predicting specific diseases,…

Machine Learning · Computer Science 2021-12-07 Chang Lu , Chandan K. Reddy , Yue Ning

In semi-supervised learning, methods that rely on confidence learning to generate pseudo-labels have been widely proposed. However, increasing research finds that when faced with noisy and biased data, the model's representation network is…

Computer Vision and Pattern Recognition · Computer Science 2024-04-29 Yanbiao Ma , Licheng Jiao , Fang Liu , Lingling Li , Shuyuan Yang , Xu Liu

Structuring latent representations in a hierarchical manner enables models to learn patterns at multiple levels of abstraction. However, most prevalent image understanding models focus on visual similarity, and learning visual hierarchies…

Computer Vision and Pattern Recognition · Computer Science 2026-01-07 Ziwei Wang , Sameera Ramasinghe , Chenchen Xu , Julien Monteil , Loris Bazzani , Thalaiyasingam Ajanthan

Deep representation learning is a ubiquitous part of modern computer vision. While Euclidean space has been the de facto standard manifold for learning visual representations, hyperbolic space has recently gained rapid traction for learning…

Computer Vision and Pattern Recognition · Computer Science 2023-05-12 Pascal Mettes , Mina Ghadimi Atigh , Martin Keller-Ressel , Jeffrey Gu , Serena Yeung

In light of the inherent entailment relations between images and text, hyperbolic point vector embeddings, leveraging the hierarchical modeling advantages of hyperbolic space, have been utilized for visual semantic representation learning.…

Artificial Intelligence · Computer Science 2024-08-21 Zhi Qiao , Linbin Han , Xiantong Zhen , Jia-Hong Gao , Zhen Qian

Retrieval-augmented generation (RAG) for biomedical knowledge faces a hierarchy-aware ontology grounding challenge: resources like HPO, DO, and MeSH use deep ``is-a" taxonomies, yet production stacks rely on Euclidean embeddings and ANN…

Information Retrieval · Computer Science 2026-04-14 Ou Deng , Shoji Nishimura , Atsushi Ogihara , Qun Jin

In recent years, there has been a growing trend of incorporating hyperbolic geometry methods into computer vision. While these methods have achieved state-of-the-art performance on various metric learning tasks using hyperbolic distance…

Computer Vision and Pattern Recognition · Computer Science 2024-05-06 Yun Yue , Fangzhou Lin , Guanyi Mou , Ziming Zhang

Embedding geometry plays a fundamental role in retrieval quality, yet dense retrievers for retrieval-augmented generation (RAG) remain largely confined to Euclidean space. However, natural language exhibits hierarchical structure from broad…

Information Retrieval · Computer Science 2026-02-10 Hiren Madhu , Ngoc Bui , Ali Maatouk , Leandros Tassiulas , Smita Krishnaswamy , Menglin Yang , Sukanta Ganguly , Kiran Srinivasan , Rex Ying