Related papers: Synchronizing random automata through repeated 'a'…
We investigate the order of the variance of the optimal alignments score of two independent iid binary random words having the same length. The letters are equiprobable, but the scoring function is such that one letter has a larger score…
The deviation of the observed frequency of a word $w$ from its expected frequency in a given sequence $x$ is used to determine whether or not the word is avoided. This concept is particularly useful in DNA linguistic analysis. The value of…
We introduce an algorithm for the uniform generation of infinite traces, i.e., infinite words up to commutation of some letters. The algorithm outputs on-the-fly approximations of a theoretical infinite trace, the latter being distributed…
We consider string matching with variable length gaps. Given a string $T$ and a pattern $P$ consisting of strings separated by variable length gaps (arbitrary strings of length in a specified range), the problem is to find all ending…
The observed frequency of the longest proper prefix, the longest proper suffix, and the longest infix of a word $w$ in a given sequence $x$ can be used for classifying $w$ as avoided or overabundant. The definitions used for the expectation…
This paper introduces sweeping permutation automata, which move over an input string in alternating left-to-right and right-to-left sweeps and have a bijective transition function. It is proved that these automata recognize the same family…
This paper situates itself in the theory of variable length codes and of finite automata where the concepts of completeness and synchronization play a central role. In this theoretical setting, we investigate the problem of finding upper…
A gapped repeat is a factor of the form $uvu$ where $u$ and $v$ are nonempty words. The period of the gapped repeat is defined as $|u|+|v|$. The gapped repeat is maximal if it cannot be extended to the left or to the right by at least one…
Two quantum finite automata are equivalent if for all input string $\omega$ over the input alphabet the two automata accept $\omega$ with equal probability. In [Theoret. Comput. Sci. 410 (2009) 3006-3017], it was shown that a $k_1$-letter…
We solve the dynamic Predecessor Problem with high probability (whp) in constant time, using only $n^{1+\delta}$ bits of memory, for any constant $\delta > 0$. The input keys are random wrt a wider class of the well studied and practically…
This paper gives new results for synchronization strings, a powerful combinatorial object that allows to efficiently deal with insertions and deletions in various communication settings: $\bullet$ We give a deterministic, linear time…
Zielonka's theorem shows that each regular set of Mazurkiewicz traces can be implemented as a system of synchronized processes with a distributed control structure called asynchronous automaton. This paper gives a polynomial algorithm for…
We revisit a fundamental problem in string matching: given a pattern of length m and a text of length n, both over an alphabet of size $\sigma$, compute the Hamming distance between the pattern and the text at every location. Several…
We exhibit a recurrence on the number of discrete line segments joining two integer points in the plane using an encoding of such segments as balanced words of given length and height over the two-letter alphabet $\{0,1\}$. We give…
In this paper we are interested in indexing texts for substring matching queries with one edit error. That is, given a text $T$ of $n$ characters over an alphabet of size $\sigma$, we are asked to build a data structure that answers the…
Let A be a finite alphabet and let L contained in (A*)^n be an n-variable language over A. We say that L is regular if it is the language accepted by a synchronous n-tape finite state automaton, it is quasi-regular if it is accepted by an…
Given a sequence of integers, we want to find a longest increasing subsequence of the sequence. It is known that this problem can be solved in $O(n \log n)$ time and space. Our goal in this paper is to reduce the space consumption while…
Let us consider the Multiple String Matching Problem. In this problem, we consider a long string, denoted by $t$, of length $n$. This string is referred to as a text. We also consider a sequence of $m$ strings, denoted by $S$, which we…
Longest common extension queries (often called longest common prefix queries) constitute a fundamental building block in multiple string algorithms, for example computing runs and approximate pattern matching. We show that a sequence of $q$…
In the circuit of two thermally coupled VO2 oscillators, we studied a higher order synchronization effect, which can be used in object classification techniques to increase the number of possible synchronous states of the oscillator system.…