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We study the temporal reconstruction of epidemics evolving over networks. Given partial or aggregated temporal information of the epidemic, our goal is to estimate the complete evolution of the spread leveraging the topology of the network…

Signal Processing · Electrical Eng. & Systems 2020-11-20 Gojko Cutura , Boning Li , Ananthram Swami , Santiago Segarra

When an epidemic spreads into a population, it is often unpractical or impossible to have a continuous monitoring of all subjects involved. As an alternative, algorithmic solutions can be used to infer the state of the whole population from…

Populations and Evolution · Quantitative Biology 2021-05-12 Abhishek Tomy , Matteo Razzanelli , Francesco Di Lauro , Daniela Rus , Cosimo Della Santina

The exploration of epidemic dynamics on dynamically evolving ("adaptive") networks poses nontrivial challenges to the modeler, such as the determination of a small number of informative statistics of the detailed network state (that is, a…

Quantitative Methods · Quantitative Biology 2015-07-07 Assimakis A. Kattis , Alexander Holiday , Ana-Andreea Stoica , Ioannis G. Kevrekidis

This work introduces NetDiff, an expressive graph denoising diffusion probabilistic architecture that generates wireless ad hoc network link topologies. Such networks, with directional antennas, can achieve unmatched performance when the…

Social and Information Networks · Computer Science 2024-10-14 Félix Marcoccia , Cédric Adjih , Paul Mühlethaler

Denoising Diffusion Probabilistic Models (DDPMs) represent a contemporary class of generative models with exceptional qualities in both synthesis and maximizing the data likelihood. These models work by traversing a forward Markov Chain…

Machine Learning · Computer Science 2024-09-16 Hang Li , Wei Jin , Geri Skenderi , Harry Shomer , Wenzhuo Tang , Wenqi Fan , Jiliang Tang

Masked graph autoencoders have emerged as a powerful graph self-supervised learning method that has yet to be fully explored. In this paper, we unveil that the existing discrete edge masking and binary link reconstruction strategies are…

Machine Learning · Computer Science 2024-02-07 Ziwen Zhao , Yuhua Li , Yixiong Zou , Jiliang Tang , Ruixuan Li

We study the network reconstruction problem for an epidemic reaction-diffusion. These models are an extension of deterministic, compartmental models to a graph setting, where the reactions within the nodes are coupled by a diffusion. We…

Chaotic Dynamics · Physics 2021-09-24 Louis-Brahim Beaufort , Pierre-Yves Massé , Antonin Reboulet , Laurent Oudre

Most real-world networks are noisy and incomplete samples from an unknown target distribution. Refining them by correcting corruptions or inferring unobserved regions typically improves downstream performance. Inspired by the impressive…

Our ability to uncover complex network structure and dynamics from data is fundamental to understanding and controlling collective dynamics in complex systems. Despite recent progress in this area, reconstructing networks with stochastic…

Physics and Society · Physics 2014-07-18 Zhesi Shen , Wen-Xu Wang , Ying Fan , Zengru Di , Ying-Cheng Lai

Using graphs to model irregular information domains is an effective approach to deal with some of the intricacies of contemporary (network) data. A key aspect is how the data, represented as graph signals, depend on the topology of the…

Signal Processing · Electrical Eng. & Systems 2023-05-02 Fernando J. Iglesias Garcia , Santiago Segarra , Antonio G. Marques

Nodes in a multiplex network are connected by multiple types of relations. However, most existing network embedding methods assume that only a single type of relation exists between nodes. Even for those that consider the multiplexity of a…

Machine Learning · Computer Science 2020-03-31 Chanyoung Park , Donghyun Kim , Jiawei Han , Hwanjo Yu

Metapopulation epidemic models are a valuable tool for studying large-scale outbreaks. With the limited availability of epidemic tracing data, it is challenging to infer the essential constituents of these models, namely, the epidemic…

Machine Learning · Computer Science 2026-03-04 Xin Li , Jonathan Cohen , Shai Pilosof , Rami Puzis

We present Deep Graph Infomax (DGI), a general approach for learning node representations within graph-structured data in an unsupervised manner. DGI relies on maximizing mutual information between patch representations and corresponding…

Machine Learning · Statistics 2018-12-24 Petar Veličković , William Fedus , William L. Hamilton , Pietro Liò , Yoshua Bengio , R Devon Hjelm

Multiplex networks are collections of networks with identical nodes but distinct layers of edges. They are genuine representations for a large variety of real systems whose elements interact in multiple fashions or flavors. However,…

Physics and Society · Physics 2024-02-27 Daniel Kaiser , Siddharth Patwardhan , Minsuk Kim , Filippo Radicchi

Pandemic(epidemic) modeling, aiming at disease spreading analysis, has always been a popular research topic especially following the outbreak of COVID-19 in 2019. Some representative models including SIR-based deep learning prediction…

Machine Learning · Computer Science 2022-12-07 Danfeng Guo , Zijie Huang , Junheng Hao , Yizhou Sun , Wei Wang , Demetri Terzopoulos

Understanding and controlling diffusion processes in complex networks is critical across domains ranging from epidemiology to information science. Here, we present ExDiff, an interactive and modular computational framework that integrates…

Social and Information Networks · Computer Science 2025-06-06 Annamaria Defilippo , Ugo Lomoio , Barbara Puccio , Pierangelo Veltri , Pietro Hiram Guzzi

Hypergraph data, which capture multi-way interactions among entities, are increasingly prevalent in the big data era. Generating new hyperlinks from an observed, usually high-dimensional hypergraph is an important yet challenging task with…

Methodology · Statistics 2026-05-14 Shihao Wu , Junyi Yang , Gongjun Xu , Ji Zhu

In a networked system, functionality can be seriously endangered when nodes are infected, due to internal random failures or a contagious virus that develops into an epidemic. Given a snapshot of the network representing the nodes' states…

Social and Information Networks · Computer Science 2019-12-13 Seyyedali Hosseinalipour , Jie Wang , Yuanzhe Tian , Huaiyu Dai

Researchers, policy makers, and engineers need to make sense of data from spreading processes as diverse as rumor spreading in social networks, viral infections, and water contamination. Classical questions include predicting infection…

Data Structures and Algorithms · Computer Science 2026-01-08 Ben Bals , Michelle Döring , Nicolas Klodt , George Skretas

Epidemics-inspired techniques have received huge attention in recent years from the distributed systems and networking communities. These algorithms and protocols rely on probabilistic message replication and redundancy to ensure reliable…

Networking and Internet Architecture · Computer Science 2007-11-20 Salvatore Scellato , Cecilia Mascolo , Mirco Musolesi , Vito Latora
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