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Solving linear systems is a ubiquitous task in science and engineering. Because directly inverting a large-scale linear system can be computationally expensive, iterative algorithms are often used to numerically find the inverse. To…

Numerical Analysis · Mathematics 2021-07-20 Zheyuan Zhu , Andrew B. Klein , Guifang Li , Shuo Pang

We introduce the `nhppp' package for simulating events from one-dimensional non-homogeneous Poisson point processes (NHPPPs) in R fast and with a small memory footprint. We developed it to facilitate the sampling of event times in discrete…

Computation · Statistics 2024-05-30 Thomas A. Trikalinos , Yuliia Sereda

Physics-Informed Neural Networks (PINN) emerged as a powerful tool for solving scientific computing problems, ranging from the solution of Partial Differential Equations to data assimilation tasks. One of the advantages of using PINN is to…

Quantum Physics · Physics 2023-01-12 Stefano Markidis

High-intensity laser plasma interactions create complex computational problems because they involve both fluid and kinetic regimes, which need models that maintain physical precision while keeping computational speed. The research…

Plasma Physics · Physics 2025-10-14 Sadra Saremi , Amirhossein Ahmadkhan Kordbacheh

The solution of the Poisson equation is a ubiquitous problem in computational astrophysics. Most notably, the treatment of self-gravitating flows involves the Poisson equation for the gravitational field. In hydrodynamics codes using…

Instrumentation and Methods for Astrophysics · Physics 2019-01-16 Bernhard Müller , Conrad Chan

Polyhedral projection is a main operation of the polyhedron abstract domain.It can be computed via parametric linear programming (PLP), which is more efficient than the classic Fourier-Motzkin elimination method.In prior work, PLP was done…

Optimization and Control · Mathematics 2019-11-25 Hang Yu , David Monniaux

We describe a finite-volume method for solving the Poisson equation on oct-tree adaptive meshes using direct solvers for individual mesh blocks. The method is a modified version of the method presented by Huang and Greengard (2000), which…

Astrophysics · Physics 2009-11-13 P. M. Ricker

Numerical modelling is an essential approach to understanding the behavior of thermal plasmas in various industrial applications. We propose a deep learning method for solving the partial differential equations in thermal plasma models. In…

Computational Physics · Physics 2020-08-06 Linlin Zhong , Qi Gu , Bingyu Wu

In this paper, we study a generalized version of the Poisson-type process by time-changing it with the geometric counting process. Our work generalizes the work done by Meoli (2023) \cite{meoli2023some}. We defined the geometric…

Probability · Mathematics 2025-02-27 Neha Gupta , Aditya Maheshwari , Dheeraj Goyal

A finite element solution of an ion channel dielectric continuum model such as Poisson-Boltzmann equation (PBE) and a system of Poisson-Nernst-Planck equations (PNP) requires tetrahedral meshes for an ion channel protein region, a membrane…

Numerical Analysis · Mathematics 2022-01-19 Zhen Chao , Sheng Gui , Benzhuo Lu , Dexuan Xie

A number of image-processing problems can be formulated as optimization problems. The objective function typically contains several terms specifically designed for different purposes. Parameters in front of these terms are used to control…

Medical Physics · Physics 2017-11-02 Chenyang Shen , Yesenia Gonzalez , Liyuan Chen , Steve B. Jiang , Xun Jia

Machine-learning-based interatomic potential energy surface (PES) models are revolutionizing the field of molecular modeling. However, although much faster than electronic structure schemes, these models suffer from costly computations via…

Computational Physics · Physics 2022-08-08 Denghui Lu , Wanrun Jiang , Yixiao Chen , Linfeng Zhang , Weile Jia , Han Wang , Mohan Chen

Tensor program tuning is a non-convex objective optimization problem, to which search-based approaches have proven to be effective. At the core of the search-based approaches lies the design of the cost model. Though deep learning-based…

Machine Learning · Computer Science 2022-11-23 Yi Zhai , Yu Zhang , Shuo Liu , Xiaomeng Chu , Jie Peng , Jianmin Ji , Yanyong Zhang

We present a fast, direct and adaptive Poisson solver for complex two-dimensional geometries based on potential theory and fast multipole acceleration. More precisely, the solver relies on the standard decomposition of the solution as the…

Numerical Analysis · Mathematics 2017-05-24 Travis Askham , Antoine J Cerfon

Electrostatics is of paramount importance to chemistry, physics, biology, and medicine. The Poisson-Boltzmann (PB) theory is a primary model for electrostatic analysis. However, it is highly challenging to compute accurate PB electrostatic…

Chemical Physics · Physics 2023-12-20 Jiahui Chen , Yongjia Xu , Xin Yang , Zixuan Cang , Weihua Geng , Guo-Wei Wei

Physics-Informed Neural Networks (PINN) are neural networks encoding the problem governing equations, such as Partial Differential Equations (PDE), as a part of the neural network. PINNs have emerged as a new essential tool to solve various…

Numerical Analysis · Mathematics 2021-07-07 Stefano Markidis

Lattice-based mechanical metamaterials are known to exhibit quite a unique mechanical behavior owing to their rational internal architecture. This includes unusual properties such as a negative Poisson's ratio, which can be easily tuned in…

Soft Condensed Matter · Physics 2023-04-19 Gerrit Felsch , Naeim Ghavidelnia , David Schwarz , Viacheslav Slesarenko

Electrostatic interactions play crucial roles in biophysical processes such as protein folding and molecular recognition. Poisson-Boltzmann equation (PBE)-based models have emerged as widely used in modeling these important processes.…

Computational Physics · Physics 2017-04-11 Ruxi Qi , Wesley M. Botello-Smith , Ray Luo

Accurate and fast simulation of particle physics processes is crucial for the high-energy physics community. Simulating particle interactions with detectors is both time consuming and computationally expensive. With the proton-proton…

High Energy Physics - Experiment · Physics 2021-08-26 Ali Hariri , Darya Dyachkova , Sergei Gleyzer

Simulation of fluid flows is crucial for modeling physical phenomena like meteorology, aerodynamics, and biomedicine. Classical numerical solvers often require fine spatiotemporal grids to satisfy stability, consistency, and convergence…

Machine Learning · Computer Science 2025-07-04 Mengtao Yan , Qi Wang , Haining Wang , Ruizhi Chengze , Yi Zhang , Hongsheng Liu , Zidong Wang , Fan Yu , Qi Qi , Hao Sun
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