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Persistence diagrams (PDs), often characterized as sets of death and birth of homology class, have been known for providing a topological representation of a graph structure, which is often useful in machine learning tasks. Prior works rely…

Machine Learning · Computer Science 2022-09-29 Chau Pham , Trung Dang , Peter Chin

Topological Data Analysis (TDA) provides a toolkit for the study of the shape of high dimensional and complex data. While operating on a space of persistence diagrams is cumbersome, persistence norms provide a simple real value measure of…

Methodology · Statistics 2023-09-26 Pawel Dlotko , Simon Rudkin

Recently a new feature representation and data analysis methodology based on a topological tool called persistent homology (and its corresponding persistence diagram summary) has started to attract momentum. A series of methods have been…

Computational Geometry · Computer Science 2019-12-13 Qi Zhao , Yusu Wang

This paper presents an efficient algorithm for the progressive approximation of Wasserstein barycenters of persistence diagrams, with applications to the visual analysis of ensemble data. Given a set of scalar fields, our approach enables…

Graphics · Computer Science 2019-10-10 Jules Vidal , Joseph Budin , Julien Tierny

Persistent Homology (PH) is a useful tool to study the underlying structure of a data set. Persistence Diagrams (PDs), which are 2D multisets of points, are a concise summary of the information found by studying the PH of a data set.…

Computational Geometry · Computer Science 2020-11-24 Megan Johnson , Jae-Hun Jung

The persistent Betti numbers are used in topological data analysis to infer the scales at which topological features appear and disappear in the filtration of a topological space. Most commonly by means of the corresponding barcode or…

Statistics Theory · Mathematics 2021-09-14 Magnus Bakke Botnan , Christian Hirsch

Topological data analysis (TDA) provides a set of data analysis tools for extracting embedded topological structures from complex high-dimensional datasets. In recent years, TDA has been a rapidly growing field which has found success in a…

Methodology · Statistics 2022-03-09 Xiaojun Zheng , Simon Mak , Liyan Xie , Yao Xie

Persistent homology (PH) is a rigorous mathematical theory that provides a robust descriptor of data in the form of persistence diagrams (PDs) which are 2D multisets of points. Their variable size makes them, however, difficult to combine…

Machine Learning · Statistics 2019-06-14 Bartosz Zielinski , Michal Lipinski , Mateusz Juda , Matthias Zeppelzauer , Pawel Dlotko

The persistence diagram is a central object in the study of persistent homology and has also been investigated in the context of random topology. The more recent notion of the verbose diagram (a.k.a. verbose barcode) is a refinement of the…

Algebraic Topology · Mathematics 2025-09-29 Jeong-hwi Joe , Woojin Kim , Cheolwoo Park

The success of autoregressive models largely depends on the effectiveness of vector quantization, a technique that discretizes continuous features by mapping them to the nearest code vectors within a learnable codebook. Two critical issues…

Computer Vision and Pattern Recognition · Computer Science 2025-06-19 Xianghong Fang , Litao Guo , Hengchao Chen , Yuxuan Zhang , XiaofanXia , Dingjie Song , Yexin Liu , Hao Wang , Harry Yang , Yuan Yuan , Qiang Sun

Persistent homology is an area within topological data analysis (TDA) that can uncover different dimensional holes (connected components, loops, voids, etc.) in data. The holes are characterized, in part, by how long they persist across…

Methodology · Statistics 2025-04-08 Sixtus Dakurah , Jessi Cisewski-Kehe

This paper targets the task with discrete and periodic class labels ($e.g.,$ pose/orientation estimation) in the context of deep learning. The commonly used cross-entropy or regression loss is not well matched to this problem as they ignore…

Computer Vision and Pattern Recognition · Computer Science 2019-11-05 Xiaofeng Liu , Yang Zou , Tong Che , Peng Ding , Ping Jia , Jane You , Kumar B. V. K

Persistent homology is a cornerstone of topological data analysis, offering a multiscale summary of topology with robustness to nuisance transformations, such as rotations and small deformations. Persistent homology has seen broad use…

Methodology · Statistics 2025-11-19 Zitian Wu , Arkaprava Roy , Leo L. Duan

In Topological Data Analysis, a common way of quantifying the shape of data is to use a persistence diagram (PD). PDs are multisets of points in $\mathbb{R}^2$ computed using tools of algebraic topology. However, this multi-set structure…

Computer Vision and Pattern Recognition · Computer Science 2021-09-20 Kit C. Chan , Umar Islambekov , Alexey Luchinsky , Rebecca Sanders

Topological data analysis (TDA) delivers invaluable and complementary information on the intrinsic properties of data inaccessible to conventional methods. However, high computational costs remain the primary roadblock hindering the…

Machine Learning · Computer Science 2022-11-28 Cuneyt Gurcan Akcora , Murat Kantarcioglu , Yulia R. Gel , Baris Coskunuzer

Persistence diagrams, the most common descriptors of Topological Data Analysis, encode topological properties of data and have already proved pivotal in many different applications of data science. However, since the (metric) space of…

Machine Learning · Statistics 2020-03-10 Mathieu Carrière , Frédéric Chazal , Yuichi Ike , Théo Lacombe , Martin Royer , Yuhei Umeda

In data mining, it is usually to describe a set of individuals using some summaries (means, standard deviations, histograms, confidence intervals) that generalize individual descriptions into a typology description. In this case, data can…

Methodology · Statistics 2016-05-03 Antonio Irpino , Rosanna Verde

In this paper, we propose a new method to measure the probabilistic robustness of stochastic jump linear system with respect to both the initial state uncertainties and the randomness in switching. Wasserstein distance which defines a…

Systems and Control · Computer Science 2014-10-03 Kooktae Lee , Abhishek Halder , Raktim Bhattacharya

Persistence diagrams, an important summary in topological data analysis, consist of a set of ordered pairs, each with positive multiplicity. Persistence diagrams are obtained via Mobius inversion and may be compared using a one-parameter…

Algebraic Topology · Mathematics 2025-02-19 Peter Bubenik , Alex Elchesen

Biomolecular structure comparison not only reveals evolutionary relationships, but also sheds light on biological functional properties. However, traditional definitions of structure or sequence similarity always involve superposition or…

Quantitative Methods · Quantitative Biology 2017-07-13 Kelin Xia