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Deep learning methods have achieved impressive performance for multi-class medical image segmentation. However, they are limited in their ability to encode topological interactions among different classes (e.g., containment and exclusion).…

We present a fast learning-based algorithm for deformable, pairwise 3D medical image registration. Current registration methods optimize an objective function independently for each pair of images, which can be time-consuming for large…

Computer Vision and Pattern Recognition · Computer Science 2019-03-14 Guha Balakrishnan , Amy Zhao , Mert R. Sabuncu , John Guttag , Adrian V. Dalca

Transformer, the model of choice for natural language processing, has drawn scant attention from the medical imaging community. Given the ability to exploit long-term dependencies, transformers are promising to help atypical convolutional…

Computer Vision and Pattern Recognition · Computer Science 2022-02-07 Hong-Yu Zhou , Jiansen Guo , Yinghao Zhang , Lequan Yu , Liansheng Wang , Yizhou Yu

We present Token-UNet, adopting the TokenLearner and TokenFuser modules to encase Transformers into UNets. While Transformers have enabled global interactions among input elements in medical imaging, current computational challenges hinder…

Computer Vision and Pattern Recognition · Computer Science 2026-02-24 Louis Fabrice Tshimanga , Andrea Zanola , Federico Del Pup , Manfredo Atzori

Deformable image registration can obtain dynamic information about images, which is of great significance in medical image analysis. The unsupervised deep learning registration method can quickly achieve high registration accuracy without…

Computer Vision and Pattern Recognition · Computer Science 2022-07-19 Xiao Fan , Shuxin Zhuang , Zhemin Zhuang , Ye Yuan , Shunmin Qiu , Alex Noel Joseph Raj , Yibiao Rong

Recent deep learning-based methods have shown promising results and runtime advantages in deformable image registration. However, analyzing the effects of hyperparameters and searching for optimal regularization parameters prove to be too…

Computer Vision and Pattern Recognition · Computer Science 2021-07-06 Tony C. W. Mok , Albert C. S. Chung

To address the limitations of Transformer decoders in capturing edge details, recognizing local textures and modeling spatial continuity, this paper proposes a novel decoder framework specifically designed for medical image segmentation,…

Computer Vision and Pattern Recognition · Computer Science 2025-12-08 Fan Zhang , Zhiwei Gu , Hua Wang

Attention-based models such as transformers have shown outstanding performance on dense prediction tasks, such as semantic segmentation, owing to their capability of capturing long-range dependency in an image. However, the benefit of…

Computer Vision and Pattern Recognition · Computer Science 2022-07-13 Ashutosh Agarwal , Chetan Arora

Transformer-based models have recently shown success in representation learning on graph-structured data beyond natural language processing and computer vision. However, the success is limited to small-scale graphs due to the drawbacks of…

Machine Learning · Computer Science 2022-10-05 Jinyoung Park , Seongjun Yun , Hyeonjin Park , Jaewoo Kang , Jisu Jeong , Kyung-Min Kim , Jung-woo Ha , Hyunwoo J. Kim

Transformers have dominated the field of natural language processing, and recently impacted the computer vision area. In the field of medical image analysis, Transformers have also been successfully applied to full-stack clinical…

Computer Vision and Pattern Recognition · Computer Science 2022-08-22 Kelei He , Chen Gan , Zhuoyuan Li , Islem Rekik , Zihao Yin , Wen Ji , Yang Gao , Qian Wang , Junfeng Zhang , Dinggang Shen

Multi-modality is widely used in medical imaging, because it can provide multiinformation about a target (tumor, organ or tissue). Segmentation using multimodality consists of fusing multi-information to improve the segmentation. Recently,…

Image and Video Processing · Electrical Eng. & Systems 2020-07-17 Tongxue Zhou , Su Ruan , Stéphane Canu

This paper presents MOAT, a family of neural networks that build on top of MObile convolution (i.e., inverted residual blocks) and ATtention. Unlike the current works that stack separate mobile convolution and transformer blocks, we…

Computer Vision and Pattern Recognition · Computer Science 2023-02-01 Chenglin Yang , Siyuan Qiao , Qihang Yu , Xiaoding Yuan , Yukun Zhu , Alan Yuille , Hartwig Adam , Liang-Chieh Chen

Data-driven deep learning approaches to image registration can be less accurate than conventional iterative approaches, especially when training data is limited. To address this whilst retaining the fast inference speed of deep learning, we…

Computer Vision and Pattern Recognition · Computer Science 2024-10-28 Xi Jia , Alexander Thorley , Wei Chen , Huaqi Qiu , Linlin Shen , Iain B Styles , Hyung Jin Chang , Ales Leonardis , Antonio de Marvao , Declan P. O'Regan , Daniel Rueckert , Jinming Duan

Convolutional blocks have played a crucial role in advancing medical image segmentation by excelling in dense prediction tasks. However, their inability to effectively capture long-range dependencies has limited their performance.…

Image and Video Processing · Electrical Eng. & Systems 2026-03-17 Siddhartha Mallick , Aayushman Ghosh , Jayanta Paul , Jaya Sil

Deformable registration of magnetic resonance images between patients with brain tumors and healthy subjects has been an important tool to specify tumor geometry through location alignment and facilitate pathological analysis. Since tumor…

Image and Video Processing · Electrical Eng. & Systems 2021-01-19 Xiaofeng Liu , Fangxu Xing , Chao Yang , C. -C. Jay Kuo , Georges ElFakhri , Jonghye Woo

Tracking multiple objects in videos relies on modeling the spatial-temporal interactions of the objects. In this paper, we propose a solution named TransMOT, which leverages powerful graph transformers to efficiently model the spatial and…

Computer Vision and Pattern Recognition · Computer Science 2021-04-06 Peng Chu , Jiang Wang , Quanzeng You , Haibin Ling , Zicheng Liu

This work proposes a multimodal diffeomorphic registration method using Neural Ordinary Differential Equations (Neural ODEs). Nonrigid registration algorithms exhibit tradeoffs between their accuracy, the computational complexity of their…

Computer Vision and Pattern Recognition · Computer Science 2025-12-30 Salvador Rodriguez-Sanz , Monica Hernandez

Transformer, benefiting from global (long-range) information modeling using self-attention mechanism, has been successful in natural language processing and computer vision recently. Convolutional Neural Networks, capable of capturing local…

Image and Video Processing · Electrical Eng. & Systems 2022-05-18 Jiangyun Li , Wenxuan Wang , Chen Chen , Tianxiang Zhang , Sen Zha , Jing Wang , Hong Yu

In unsupervised medical image registration, the predominant approaches involve the utilization of a encoder-decoder network architecture, allowing for precise prediction of dense, full-resolution displacement fields from given paired…

Computer Vision and Pattern Recognition · Computer Science 2024-02-07 Xi Jia , Wenqi Lu , Xinxing Cheng , Jinming Duan

In both Computer Vision and the wider Deep Learning field, the Transformer architecture is well-established as state-of-the-art for many applications. For Multitask Learning, however, where there may be many more queries necessary compared…

Computer Vision and Pattern Recognition · Computer Science 2025-08-07 Christian Bohn , Thomas Kurbiel , Klaus Friedrichs , Hasan Tercan , Tobias Meisen
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