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Natural language inference (NLI) is critical for complex decision-making in biomedical domain. One key question, for example, is whether a given biomedical mechanism is supported by experimental evidence. This can be seen as an NLI problem…

Computation and Language · Computer Science 2022-10-27 Mohaddeseh Bastan , Mihai Surdeanu , Niranjan Balasubramanian

Backgrounds: Information extraction (IE) is critical in clinical natural language processing (NLP). While large language models (LLMs) excel on generative tasks, their performance on extractive tasks remains debated. Methods: We…

To reduce the large amount of time spent screening, identifying, and recruiting patients into clinical trials, we need prescreening systems that are able to automate the data extraction and decision-making tasks that are typically relegated…

Computation and Language · Computer Science 2016-09-07 Abhishek Kalyan Adupa , Ravi Prakash Garg , Jessica Corona-Cox , Sanjiv. J. Shah , Siddhartha R. Jonnalagadda

Multimodal Large Language Models (MLLMs) have shown transformative potential in medical applications, yet their performance is hindered by conventional data curation strategies that rely on coarse-grained partitioning by modality or…

Computation and Language · Computer Science 2026-04-29 Jianghang Lin , Haihua Yang , Deli Yu , Kai Wu , Kai Ye , Jinghao Lin , Zihan Wang , Yuhang Wu , Liujuan Cao

Transformers-based models, such as BERT, have dramatically improved the performance for various natural language processing tasks. The clinical knowledge enriched model, namely ClinicalBERT, also achieved state-of-the-art results when…

Computation and Language · Computer Science 2022-04-18 Yikuan Li , Ramsey M. Wehbe , Faraz S. Ahmad , Hanyin Wang , Yuan Luo

Although machine learning has become a powerful tool to augment doctors in clinical analysis, the immense amount of labeled data that is necessary to train supervised learning approaches burdens each development task as time and resource…

A long-running goal of the clinical NLP community is the extraction of important variables trapped in clinical notes. However, roadblocks have included dataset shift from the general domain and a lack of public clinical corpora and…

Computation and Language · Computer Science 2022-12-01 Monica Agrawal , Stefan Hegselmann , Hunter Lang , Yoon Kim , David Sontag

In recent years, the interest in Big Data sources has been steadily growing within the Official Statistic community. The Italian National Institute of Statistics (Istat) is currently carrying out several Big Data pilot studies. One of these…

Machine Learning · Computer Science 2021-06-17 Fabrizio De Fausti , Francesco Pugliese , Diego Zardetto

Chronic pain is a global health challenge affecting millions of individuals, making it essential for physicians to have reliable and objective methods to measure the functional impact of clinical treatments. Traditionally used methods, like…

Machine Learning · Computer Science 2026-03-23 Yuanheng Mao , Lillian Yang , Stephen Yang , Ethan Shao , Zihan Li

As large language models (LLMs) become the standard in many NLP applications, we explore the potential of medium-sized pretrained transformer models as a viable alternative for medical record processing. Medical records generated by…

Signal Processing · Electrical Eng. & Systems 2025-02-28 Boammani Aser Lompo , Thanh-Dung Le , Philippe Jouvet , Rita Noumeir

An overwhelmingly large amount of knowledge in the materials domain is generated and stored as text published in peer-reviewed scientific literature. Recent developments in natural language processing, such as bidirectional encoder…

Computation and Language · Computer Science 2021-10-01 Tanishq Gupta , Mohd Zaki , N. M. Anoop Krishnan , Mausam

Clinical notes contain information about patients that goes beyond structured data like lab values and medications. However, clinical notes have been underused relative to structured data, because notes are high-dimensional and sparse. This…

Computation and Language · Computer Science 2020-12-01 Kexin Huang , Jaan Altosaar , Rajesh Ranganath

Natural language processing (NLP) applications such as named entity recognition (NER) for low-resource corpora do not benefit from recent advances in the development of large language models (LLMs) where there is still a need for larger…

Computation and Language · Computer Science 2025-07-22 Jamil Zaghir , Mina Bjelogrlic , Jean-Philippe Goldman , Soukaïna Aananou , Christophe Gaudet-Blavignac , Christian Lovis

The field of natural language processing (NLP) has made significant progress with the rapid development of deep learning technologies. One of the research directions in text sentiment analysis is sentiment analysis of medical texts, which…

Computation and Language · Computer Science 2024-12-04 Yinan Chen

Clinical auditing requires codified data for aggregation and analysis of patterns. However in the medical domain obtaining structured data can be difficult as the most natural, expressive and comprehensive way to record a clinical encounter…

Computers and Society · Computer Science 2016-06-14 Sedigheh Khademi , Christopher Palmer , Pari Delir Haghighi , Philip Lewis , Frada Burstein

Large Language Models (LLMs) have become a key topic in AI and NLP, transforming sectors like healthcare, finance, education, and marketing by improving customer service, automating tasks, providing insights, improving diagnostics, and…

Artificial Intelligence · Computer Science 2025-12-05 Vignesh Kumar Kembu , Pierandrea Morandini , Marta Bianca Maria Ranzini , Antonino Nocera

Menstrual health is a critical yet often overlooked aspect of women's healthcare. Despite its clinical relevance, detailed data on menstrual characteristics is rarely available in structured medical records. To address this gap, we propose…

Computation and Language · Computer Science 2025-04-01 Anna Shopova , Cristoph Lippert , Leslee J. Shaw , Eugenia Alleva

Extracting patterns and useful information from Natural Language datasets is a challenging task, especially when dealing with data written in a language different from English, like Italian. Machine and Deep Learning, together with Natural…

Computation and Language · Computer Science 2021-04-30 Patrizia Agnello , Silvia M. Ansaldi , Emilia Lenzi , Alessio Mongelluzzo , Manuel Roveri

Named entity recognition (NER) is a widely applicable natural language processing task and building block of question answering, topic modeling, information retrieval, etc. In the medical domain, NER plays a crucial role by extracting…

Computation and Language · Computer Science 2020-11-13 Veysel Kocaman , David Talby

Continuity of care is crucial to ensuring positive health outcomes for patients discharged from an inpatient hospital setting, and improved information sharing can help. To share information, caregivers write discharge notes containing…

Computation and Language · Computer Science 2021-06-07 James Mullenbach , Yada Pruksachatkun , Sean Adler , Jennifer Seale , Jordan Swartz , T. Greg McKelvey , Hui Dai , Yi Yang , David Sontag