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Genetic Programming (GP) is a computationally intensive technique which is naturally parallel in nature. Consequently, many attempts have been made to improve its run-time from exploiting highly parallel hardware such as GPUs. However, a…

Neural and Evolutionary Computing · Computer Science 2018-09-21 Darren M. Chitty

Program synthesis is the task of automatically generating expressions that satisfy a given specification. Program synthesis techniques have been used to automate the generation of loop invariants in code, synthesize function summaries, and…

Logic in Computer Science · Computer Science 2020-10-13 Elizabeth Polgreen , Sanjit A. Seshia

Novel technologies in genomics allow creating data in exascale dimension with relatively minor effort of human and laboratory and thus monetary resources compared to capabilities only a decade ago. While the availability of this data…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-11-10 Sandra Gesing , Thomas Richard Connor , Ian Taylor

In this study, we use Genetic Programming (GP) to compose new optimization benchmark functions. Optimization benchmarks have the important role of showing the differences between evolutionary algorithms, making it possible for further…

Neural and Evolutionary Computing · Computer Science 2024-03-22 Yifan He , Claus Aranha

Constraint-solving-based program invariant synthesis takes a parametric invariant template and encodes the (inductive) invariant conditions into constraints. The problem of characterizing the set of all valid parameter assignments is…

Programming Languages · Computer Science 2024-09-20 Hao Wu , Qiuye Wang , Bai Xue , Naijun Zhan , Lihong Zhi , Zhihong Yang

Estimating the effort of software systems is an essential topic in software engineering, carrying out an estimation process reliably and accurately for a software forms a vital part of the software development phases. Many researchers have…

Software Engineering · Computer Science 2018-05-03 Najla Akram , AL-Saati , Taghreed Riyadh Alreffaee

Quadratic programming (QP) is the most widely applied category of problems in nonlinear programming. Many applications require real-time/fast solutions, though not necessarily with high precision. Existing methods either involve matrix…

Machine Learning · Computer Science 2025-09-23 Ziang Chen , Xiaohan Chen , Jialin Liu , Xinshang Wang , Wotao Yin

With the advent of neural language models, the performance of code generation has been significantly boosted. However, the problem of repetitions during the generation process continues to linger. Previous work has primarily focused on…

Computation and Language · Computer Science 2025-05-16 Yihong Dong , Yuchen Liu , Xue Jiang , Zhi Jin , Ge Li

We propose a novel approach for the challenge of designing less complex yet highly effective convolutional neural networks (CNNs) through the use of cartesian genetic programming (CGP) for neural architecture search (NAS). Our approach…

Neural and Evolutionary Computing · Computer Science 2023-06-06 Cosijopii Garcia-Garcia , Alicia Morales-Reyes , Hugo Jair Escalante

Generating molecules, both in a directed and undirected fashion, is a huge part of the drug discovery pipeline. Genetic algorithms (GAs) generate molecules by randomly modifying known molecules. In this paper we show that GAs are very…

Neural and Evolutionary Computing · Computer Science 2023-10-16 Austin Tripp , José Miguel Hernández-Lobato

Discovering causal genetic variants from large genetic association studies poses many difficult challenges. Assessing which genetic markers are involved in determining trait status is a computationally demanding task, especially in the…

Genomics · Quantitative Biology 2015-04-09 Andrew L. Beam , Alison Motsinger-Reif , Jon Doyle

Data-driven discovery of governing equations is of great significance for helping us understand intrinsic mechanisms and build physical models. Recently, numerous highly innovative algorithms have emerged, aimed at inversely discovering the…

Data Analysis, Statistics and Probability · Physics 2024-03-29 Wenjun Ma , Jun Zhang , Kaikai Feng , Haoyun Xing , Dongsheng Wen

This note presents a simple and effective variation of genetic algorithm (GA) for solving RCPSP, denoted as 2-Phase Genetic Algorithm (2PGA). The 2PGA implements GA parent selection in two phases: Phase-1 includes the best current solutions…

Neural and Evolutionary Computing · Computer Science 2025-09-04 D. Sun , S. Zhou

This paper explores the limits of the current generation of large language models for program synthesis in general purpose programming languages. We evaluate a collection of such models (with between 244M and 137B parameters) on two new…

Grammars provide a convenient and powerful mechanism to define the space of possible solutions for a range of problems. However, when used in grammatical evolution (GE), great care must be taken in the design of a grammar to ensure that the…

Neural and Evolutionary Computing · Computer Science 2022-04-18 Grant Dick , Peter A. Whigham

In general, we can not use algebraic or enumerative methods to optimize a quality control (QC) procedure so as to detect the critical random and systematic analytical errors with stated probabilities, while the probability for false…

Neural and Evolutionary Computing · Computer Science 2018-12-03 Aristides T. Hatjimihail , Theophanes T. Hatjimihail

Artificial data synthesis is currently a well studied topic with useful applications in data science, computer vision, graphics and many other fields. Generating realistic data is especially challenging since human perception is highly…

Computational Geometry · Computer Science 2019-01-23 Gil Shamai , Ron Slossberg , Ron Kimmel

Pre-trained large language models(LLMs) have attracted increasing attention in biomedical domains due to their success in natural language processing. However, the complex traits and heterogeneity of multi-sources genomics data pose…

Computation and Language · Computer Science 2025-11-25 Yanjun Lyu , Zihao Wu , Lu Zhang , Jing Zhang , Yiwei Li , Wei Ruan , Zhengliang Liu , Zeyu Zhang , Xiang Li , Rongjie Liu , Chao Huang , Wentao Li , Tianming Liu , Dajiang Zhu

Code synthesis, which requires a deep understanding of complex natural language problem descriptions, generation of code instructions for complex algorithms and data structures, and the successful execution of comprehensive unit tests,…

Computation and Language · Computer Science 2024-05-21 Md. Ashraful Islam , Mohammed Eunus Ali , Md Rizwan Parvez

Understanding which genes control which traits in an organism remains one of the central challenges in biology. Despite significant advances in data collection technology, our ability to map genes to traits is still limited. This…

Genomics · Quantitative Biology 2025-08-22 Manuel Serna-Aguilera , Fiona L. Goggin , Aranyak Goswami , Alexander Bucksch , Suxing Liu , Khoa Luu
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