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Transfer learning is widely used for training machine learning models. Here, we study the role of transfer learning for training fully convolutional networks (FCNs) for medical image segmentation. Our experiments show that although transfer…

Computer Vision and Pattern Recognition · Computer Science 2022-04-05 Davood Karimi , Simon K. Warfield , Ali Gholipour

Deep Learning (DL) based Compressed Sensing (CS) has been applied for better performance of image reconstruction than traditional CS methods. However, most existing DL methods utilize the block-by-block measurement and each measurement…

Image and Video Processing · Electrical Eng. & Systems 2022-09-29 Zhifeng Wang , Zhenghui Wang , Chunyan Zeng , Yan Yu , Xiangkui Wan

Magnetic resonance fingerprinting (MRF) quantifies multiple nuclear magnetic resonance parameters in a single and fast acquisition. Standard MRF reconstructs parametric maps using dictionary matching, which lacks scalability due to…

Computer Vision and Pattern Recognition · Computer Science 2019-06-06 Fabian Balsiger , Amaresha Shridhar Konar , Shivaprasad Chikop , Vimal Chandran , Olivier Scheidegger , Sairam Geethanath , Mauricio Reyes

CT scanners that are commonly-used in hospitals nowadays produce low-resolution images, up to 512 pixels in size. One pixel in the image corresponds to a one millimeter piece of tissue. In order to accurately segment tumors and make…

Computer Vision and Pattern Recognition · Computer Science 2023-04-07 Mariana-Iuliana Georgescu , Radu Tudor Ionescu , Nicolae Verga

Perfusion-weighted magnetic resonance imaging (MRI) is an imaging technique that allows one to measure tissue perfusion in an organ of interest through the injection of an intravascular paramagnetic contrast agent (CA). Due to a preference…

Computer Vision and Pattern Recognition · Computer Science 2017-08-28 Cagdas Ulas , Christine Preibisch , Jonathan Sperl , Thomas Pyka , Jayashree Kalpathy-Cramer , Bjoern Menze

Parallel MRI is a fast imaging technique that enables the acquisition of highly resolved images in space. It relies on $k$-space undersampling and multiple receiver coils with complementary sensitivity profiles in order to reconstruct a…

MRI with multiple protocols is commonly used for diagnosis, but it suffers from a long acquisition time, which yields the image quality vulnerable to say motion artifacts. To accelerate, various methods have been proposed to reconstruct…

Image and Video Processing · Electrical Eng. & Systems 2020-04-09 Bo Zhou , S. Kevin Zhou

Image analysis using more than one modality (i.e. multi-modal) has been increasingly applied in the field of biomedical imaging. One of the challenges in performing the multimodal analysis is that there exist multiple schemes for fusing the…

Computer Vision and Pattern Recognition · Computer Science 2018-06-19 Zhe Guo , Xiang Li , Heng Huang , Ning Guo , Quanzheng Li

The technologically-relevant task of feature extraction from data performed in deep-learning systems is routinely accomplished as repeated fast Fourier transforms (FFT) electronically in prevalent domain-specific architectures such as in…

Intraoperative imaging techniques for reconstructing deformable tissues in vivo are pivotal for advanced surgical systems. Existing methods either compromise on rendering quality or are excessively computationally intensive, often demanding…

Computer Vision and Pattern Recognition · Computer Science 2023-12-27 Chen Yang , Kailing Wang , Yuehao Wang , Qi Dou , Xiaokang Yang , Wei Shen

We propose a convolutional neural network (CNN) approach that works synergistically with physics-based reconstruction methods to reduce artifacts in accelerated MRI. Given reconstructed coil k-spaces, our network predicts a k-space…

Image and Video Processing · Electrical Eng. & Systems 2019-11-19 Onur Beker , Congyu Liao , Jaejin Cho , Zijing Zhang , Kawin Setsompop , Berkin Bilgic

Ptychography is a popular imaging technique that combines diffractive imaging with scanning microscopy. The technique consists of a coherent beam that is scanned across an object in a series of overlapping positions, leading to reliable and…

Numerical Analysis · Mathematics 2024-08-08 Ricardo Parada , Samy Wu Fung , Stanley Osher

Parallel imaging is a widely-used technique to accelerate magnetic resonance imaging (MRI). However, current methods still perform poorly in reconstructing artifact-free MRI images from highly undersampled k-space data. Recently, implicit…

Image and Video Processing · Electrical Eng. & Systems 2022-10-20 Ruimin Feng , Qing Wu , Yuyao Zhang , Hongjiang Wei

With the effective application of deep learning in computer vision, breakthroughs have been made in the research of super-resolution images reconstruction. However, many researches have pointed out that the insufficiency of the neural…

Image and Video Processing · Electrical Eng. & Systems 2021-06-11 Yibo Guo , Haidi Wang , Yiming Fan , Shunyao Li , Mingliang Xu

Real-time 3D fluorescence microscopy is crucial for the spatiotemporal analysis of live organisms, such as neural activity monitoring. The eXtended field-of-view light field microscope (XLFM), also known as Fourier light field microscope,…

Image and Video Processing · Electrical Eng. & Systems 2023-06-16 Josué Page Vizcaíno , Panagiotis Symvoulidis , Zeguan Wang , Jonas Jelten , Paolo Favaro , Edward S. Boyden , Tobias Lasser

Transformer-based methods have achieved impressive image restoration performance due to their capacities to model long-range dependency compared to CNN-based methods. However, advances like SwinIR adopts the window-based and local attention…

Computer Vision and Pattern Recognition · Computer Science 2023-09-26 Dafeng Zhang , Feiyu Huang , Shizhuo Liu , Xiaobing Wang , Zhezhu Jin

Background: Image reconstruction from highly undersampled 4D flow MRI data can be very time consuming and may result in significant underestimation of velocities depending on regularization, thereby limiting the applicability of the method.…

Medical Physics · Physics 2025-04-01 Luuk Jacobs , Marco Piccirelli , Valery Vishnevskiy , Sebastian Kozerke

Segmentation of 3D medical images is a critical task for accurate diagnosis and treatment planning. Convolutional neural networks (CNNs) have dominated the field, achieving significant success in 3D medical image segmentation. However, CNNs…

Image and Video Processing · Electrical Eng. & Systems 2025-02-11 Canxuan Gang

Image Representation learning via input reconstruction is a common technique in machine learning for generating representations that can be effectively utilized by arbitrary downstream tasks. A well-established approach is using…

Neural and Evolutionary Computing · Computer Science 2025-06-10 Raoof HojatJalali , Edmondo Trentin

Coronary microvascular disease constitutes a substantial risk to human health. Employing computer-aided analysis and diagnostic systems, medical professionals can intervene early in disease progression, with 3D vessel segmentation serving…

Image and Video Processing · Electrical Eng. & Systems 2024-01-15 Xinyuan Wang , Chengwei Pan , Hongming Dai , Gangming Zhao , Jinpeng Li , Xiao Zhang , Yizhou Yu