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The rapid growth of biomedical literature and curated databases has made it increasingly difficult for researchers to systematically connect biomarker mechanisms to actionable drug combination hypotheses. We present AI Co-Scientist (CoDHy),…

Computation and Language · Computer Science 2026-03-03 Raneen Younis , Suvinava Basak , Lukas Chavez , Zahra Ahmadi

We propose a general method for automated word puzzle generation. Contrary to previous approaches in this novel field, the presented method does not rely on highly structured datasets obtained with serious human annotation effort: it only…

Computation and Language · Computer Science 2012-06-05 Balazs Pinter , Gyula Voros , Zoltan Szabo , Andras Lorincz

Natural language generation provides designers with methods for automatically generating text, e.g. for creating summaries, chatbots and game content. In practise, text generators are often either learned and hard to interpret, or created…

Computation and Language · Computer Science 2020-09-11 Thomas Winters , Luc De Raedt

The overwhelming amount of available scholarly literature in the life sciences poses significant challenges to scientists wishing to keep up with important developments related to their research, but also provides a useful resource for the…

Quantitative Methods · Quantitative Biology 2011-03-29 Huijun Wang , Ying Ding , Jie Tang , Xiao Dong , Bing He , Judy Qiu , David J. Wild

Originally designed to model text, topic modeling has become a powerful tool for uncovering latent structure in domains including medicine, finance, and vision. The goals for the model vary depending on the application: in some cases, the…

Machine Learning · Statistics 2014-11-24 Finale Doshi-Velez , Byron Wallace , Ryan Adams

Neural language models (LMs) have been shown to capture complex linguistic patterns, yet their utility in understanding human language and more broadly, human cognition, remains debated. While existing work in this area often evaluates…

Computation and Language · Computer Science 2026-04-10 Kanishka Misra , Najoung Kim

We summarize our exploratory investigation into whether Machine Learning (ML) techniques applied to publicly available professional text can substantially augment strategic planning for astronomy. We find that an approach based on Latent…

Digital Libraries · Computer Science 2024-07-04 Brian Thomas , Harley Thronson , Anthony Buonomo , Louis Barbier

Technology opportunities are critical information that serve as a foundation for advancements in technology, industry, and innovation. This paper proposes a framework based on the temporal relationships between technologies to identify…

Computation and Language · Computer Science 2025-09-15 Wonyoung Kim , Sujeong Seo , Juhyun Lee

Topic models are in widespread use in natural language processing and beyond. Here, we propose a new framework for the evaluation of probabilistic topic modeling algorithms based on synthetic corpora containing an unambiguously defined…

Computation and Language · Computer Science 2019-01-29 Hanyu Shi , Martin Gerlach , Isabel Diersen , Doug Downey , Luis A. N. Amaral

Natural language processing is a prompt research area across the country. Parsing is one of the very crucial tool in language analysis system which aims to forecast the structural relationship among the words in a given sentence. Many…

Computation and Language · Computer Science 2014-03-26 K. Sureka , K. G. Srinivasagan , S. Suganthi

This research paper outlines the development and implementation of a novel Clinical Decision Support System (CDSS) that integrates AI predictive modeling with medical knowledge bases. It utilizes the quantifiable information elements in lab…

Artificial Intelligence · Computer Science 2026-03-17 Muhammad Hammad Maqsood , Mubashir Sajid , Khubaib Ahmed , Muhammad Usamah Shahid , Muddassar Farooq

Materials discovery and design are essential for advancing technology across various industries by enabling the development of application-specific materials. Recent research has leveraged Large Language Models (LLMs) to accelerate this…

Computation and Language · Computer Science 2025-02-11 Shrinidhi Kumbhar , Venkatesh Mishra , Kevin Coutinho , Divij Handa , Ashif Iquebal , Chitta Baral

We investigate whether large language models can perform the creative hypothesis generation that human researchers regularly do. While the error rate is high, generative AI seems to be able to effectively structure vast amounts of…

Computation and Language · Computer Science 2023-04-25 Yang Jeong Park , Daniel Kaplan , Zhichu Ren , Chia-Wei Hsu , Changhao Li , Haowei Xu , Sipei Li , Ju Li

Hypothesis generation is becoming a crucial time-saving technique which allows biomedical researchers to quickly discover implicit connections between important concepts. Typically, these systems operate on domain-specific fractions of…

Information Retrieval · Computer Science 2017-06-02 Justin Sybrandt , Michael Shtutman , Ilya Safro

Biomedical research papers use significantly different language and jargon when compared to typical English text, which reduces the utility of pre-trained NLP models in this domain. Meanwhile Medline, a database of biomedical abstracts,…

Machine Learning · Computer Science 2021-09-15 Justin Sybrandt , Ilya Safro

With the advent of semantic web, various tools and techniques have been introduced for presenting and organizing knowledge. Concept hierarchies are one such technique which gained significant attention due to its usefulness in creating…

Artificial Intelligence · Computer Science 2016-11-30 V. S. Anoop , S. Asharaf , P. Deepak

In this paper we present a model for unsupervised topic discovery in texts corpora. The proposed model uses documents, words, and topics lookup table embedding as neural network model parameters to build probabilities of words given topics,…

Computation and Language · Computer Science 2019-11-26 Sileye 0. Ba

Cognitive delegation to artificial intelligence (AI) systems is transforming scientific research by enabling the automation of analytical processes and the discovery of new patterns in large datasets. This study examines the ability of AI…

Quantitative Methods · Quantitative Biology 2025-03-13 Virginia del Campo , Iker Malaina

The healthcare environment is commonly referred to as "information-rich" but also "knowledge poor". Healthcare systems collect huge amounts of data from various sources: lab reports, medical letters, logs of medical tools or programs,…

Computation and Language · Computer Science 2024-01-22 Elena-Simona Apostol , Ciprian-Octavian Truică

Generating long and coherent reports to describe medical images poses challenges to bridging visual patterns with informative human linguistic descriptions. We propose a novel Hybrid Retrieval-Generation Reinforced Agent (HRGR-Agent) which…

Computer Vision and Pattern Recognition · Computer Science 2018-11-27 Christy Y. Li , Xiaodan Liang , Zhiting Hu , Eric P. Xing