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Biological screens are plagued by false positive hits resulting from aggregation. Thus, methods to triage small colloidally aggregating molecules (SCAMs) are in high demand. Herein, we disclose a bespoke machine-learning tool to confidently…

Quantitative Methods · Quantitative Biology 2021-05-04 Kuan Lee , Ann Yang , Yen-Chu Lin , Daniel Reker , Goncalo J. L. Bernardes , Tiago Rodrigues

Explainable AI (XAI) is a research area whose objective is to increase trustworthiness and to enlighten the hidden mechanism of opaque machine learning techniques. This becomes increasingly important in case such models are applied to the…

Machine Learning · Computer Science 2021-04-19 Danilo Numeroso , Davide Bacciu

Explainable AI (xAI) interventions aim to improve interpretability for complex black-box models, not only to improve user trust but also as a means to extract scientific insights from high-performing predictive systems. In molecular…

Machine Learning · Computer Science 2025-04-04 Jonas Teufel , Annika Leinweber , Pascal Friederich

The field of drug discovery has experienced a remarkable transformation with the advent of artificial intelligence (AI) and machine learning (ML) technologies. However, as these AI and ML models are becoming more complex, there is a growing…

The extensive utilization of biometric authentication systems have emanated attackers / imposters to forge user identity based on morphed images. In this attack, a synthetic image is produced and merged with genuine. Next, the resultant…

Computer Vision and Pattern Recognition · Computer Science 2023-05-01 Rudresh Dwivedi , Ritesh Kumar , Deepak Chopra , Pranay Kothari , Manjot Singh

Advances in machine learning have led to graph neural network-based methods for drug discovery, yielding promising results in molecular design, chemical synthesis planning, and molecular property prediction. However, current graph neural…

Quantitative Methods · Quantitative Biology 2021-07-13 Jiahua Rao , Shuangjia Zheng , Yuedong Yang

The rapid emergence of image synthesis models poses challenges to the generalization of AI-generated image detectors. However, existing methods often rely on model-specific features, leading to overfitting and poor generalization. In this…

Computer Vision and Pattern Recognition · Computer Science 2026-01-14 Lei Tan , Shuwei Li , Mohan Kankanhalli , Robby T. Tan

Machine learning, and representation learning in particular, has the potential to facilitate drug discovery by screening a large chemical space in silico. A successful approach for representing molecules is to treat them as a graph and…

Chemical Physics · Physics 2023-10-06 Ronen Taub , Yonatan Savir

In recent years, AI models that mine intrinsic patterns from molecular structures and protein sequences have shown promise in accelerating drug discovery. However, these methods partly lag behind real-world pharmaceutical approaches of…

Machine Learning · Computer Science 2023-10-17 Yizhen Luo , Xing Yi Liu , Kai Yang , Kui Huang , Massimo Hong , Jiahuan Zhang , Yushuai Wu , Zaiqing Nie

Searching for potential active compounds in large databases is a necessary step to reduce time and costs in modern drug discovery pipelines. Such virtual screening methods seek to provide predictions that allow the search space to be…

Biomolecules · Quantitative Biology 2023-05-23 Rafael Mena-Yedra , Juana L. Redondo , Horacio Pérez-Sánchez , Pilar M. Ortigosa

The role of Artificial Intelligence (AI) is growing in every stage of drug development. Nevertheless, a major challenge in drug discovery AI remains: Drug pharmacokinetic (PK) and Drug-Target Interaction (DTI) datasets collected in…

Quantitative Methods · Quantitative Biology 2025-10-27 Bing Hu , Jong-Hoon Park , Helen Chen , Young-Rae Cho , Anita Layton

In the domain of unsupervised image-to-image transformation using generative transformative models, CycleGAN has become the architecture of choice. One of the primary downsides of this architecture is its relatively slow rate of…

Computer Vision and Pattern Recognition · Computer Science 2023-12-07 Tibor Sloboda , Lukáš Hudec , Wanda Benešová

Molecular property prediction is a crucial task that guides the design of new compounds, including drugs and materials. While explainable artificial intelligence methods aim to scrutinize model predictions by identifying influential…

Machine Learning · Computer Science 2025-08-27 Łukasz Janisiów , Marek Kochańczyk , Bartosz Zieliński , Tomasz Danel

Explainable artificial intelligence (XAI) has helped elucidate the internal mechanisms of machine learning algorithms, bolstering their reliability by demonstrating the basis of their predictions. Several XAI models consider causal…

Machine Learning · Computer Science 2024-04-30 Daisuke Takahashi , Shohei Shimizu , Takuma Tanaka

Explainable AI (XAI) and interpretable machine learning methods help to build trust in model predictions and derived insights, yet also present a perverse incentive for analysts to manipulate XAI metrics to support pre-specified…

Machine Learning · Computer Science 2025-07-16 Rahul Sharma , Sergey Redyuk , Sumantrak Mukherjee , Andrea Šipka , Eyke Hüllermeier , Sebastian Vollmer , David Selby

The successful application of machine learning (ML) in catalyst design relies on high-quality and diverse data to ensure effective generalization to novel compositions, thereby aiding in catalyst discovery. However, due to complex…

We introduce a novel methodology for identifying adversarial attacks on deepfake detectors using eXplainable Artificial Intelligence (XAI). In an era characterized by digital advancement, deepfakes have emerged as a potent tool, creating a…

Cryptography and Security · Computer Science 2024-08-20 Ben Pinhasov , Raz Lapid , Rony Ohayon , Moshe Sipper , Yehudit Aperstein

Explainability poses a major challenge to artificial intelligence (AI) techniques. Current studies on explainable AI (XAI) lack the efficiency of extracting global knowledge about the learning task, thus suffer deficiencies such as…

Computer Vision and Pattern Recognition · Computer Science 2023-06-14 Ruitao Xie , Jingbang Chen , Limai Jiang , Rui Xiao , Yi Pan , Yunpeng Cai

Accurate and timely diagnosis of multi-class skin lesions is hampered by subjective methods, inherent data imbalance in datasets like HAM10000, and the "black box" nature of Deep Learning (DL) models. This study proposes a trustworthy and…

Computer Vision and Pattern Recognition · Computer Science 2025-12-05 Kim Gerard A. Villanueva , Priyanka Kumar
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