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Regularization is one of the crucial ingredients of deep learning, yet the term regularization has various definitions, and regularization methods are often studied separately from each other. In our work we present a systematic, unifying…
Standardisation of healthcare has been the focus of hospital management and clinicians since the 1990's. Electronic health records were already intended to provide clinicians with real-time access to clinical knowledge and care plans while…
Neural networks are prone to overfitting and memorizing data patterns. To avoid over-fitting and enhance their generalization and performance, various methods have been suggested in the literature, including dropout, regularization, label…
Data augmentation is one of the most prevalent tools in deep learning, underpinning many recent advances, including those from classification, generative models, and representation learning. The standard approach to data augmentation…
Graph classification, which aims to identify the category labels of graphs, plays a significant role in drug classification, toxicity detection, protein analysis etc. However, the limitation of scale in the benchmark datasets makes it easy…
Domain generalization typically requires data from multiple source domains for model learning. However, such strong assumption may not always hold in practice, especially in medical field where the data sharing is highly concerned and…
Data augmentation is a cornerstone technique in deep learning, widely used to improve model generalization. Traditional methods like random cropping and color jittering, as well as advanced techniques such as CutOut, Mixup, and CutMix, have…
Data linkage is increasingly used in health research and policy making and is relied on for understanding health inequalities. However, linked data is only as useful as the underlying data quality, and differential linkage rates may induce…
Data augmentation is a widely used technique and an essential ingredient in the recent advance in self-supervised representation learning. By preserving the similarity between augmented data, the resulting data representation can improve…
Graph Neural Network (GNNs) based methods have recently become a popular tool to deal with graph data because of their ability to incorporate structural information. The only hurdle in the performance of GNNs is the lack of labeled data.…
The disease coding task involves assigning a unique identifier from a controlled vocabulary to each disease mentioned in a clinical document. This task is relevant since it allows information extraction from unstructured data to perform,…
Large-scale, high-quality data are considered an essential factor for the successful application of many deep learning techniques. Meanwhile, numerous real-world deep learning tasks still have to contend with the lack of sufficient amounts…
Computational pathology, integrating computational methods and digital imaging, has shown to be effective in advancing disease diagnosis and prognosis. In recent years, the development of machine learning and deep learning has greatly…
Using additional training data is known to improve the results, especially for medical image 3D segmentation where there is a lack of training material and the model needs to generalize well from few available data. However, the new data…
Large language models exhibit promising general capabilities but often lack specialized knowledge for domain-specific tasks. Developing domain experts from a base model enables a range of applications without prohibitive training costs.…
Many key problems in machine learning and data science are routinely modeled as optimization problems and solved via optimization algorithms. With the increase of the volume of data and the size and complexity of the statistical models used…
Although the availability of a large amount of data is usually given for granted, there are relevant scenarios where this is not the case; for instance, in the biomedical/healthcare domain, some applications require to build huge datasets…
Data augmentation is a technique to improve the generalization ability of machine learning methods by increasing the size of the dataset. However, since every augmentation method is not equally effective for every dataset, you need to…
Optimization of image transformation functions for the purpose of data augmentation has been intensively studied. In particular, adversarial data augmentation strategies, which search augmentation maximizing task loss, show significant…
Augmentation is an effective alternative to utilize the small amount of labeled protein data. However, most of the existing work focuses on design-ing new architectures or pre-training tasks, and relatively little work has studied data…