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In recent years, numerous machine learning models which attempt to solve polypharmacy side effect identification, drug-drug interaction prediction and combination therapy design tasks have been proposed. Here, we present a unified…

Machine Learning · Computer Science 2021-12-14 Benedek Rozemberczki , Stephen Bonner , Andriy Nikolov , Michael Ughetto , Sebastian Nilsson , Eliseo Papa

In this paper, we propose a data collaboration analysis method for distributed datasets. The proposed method is a centralized machine learning while training datasets and models remain distributed over some institutions. Recently, data…

Machine Learning · Computer Science 2019-02-21 Akira Imakura , Tetsuya Sakurai

The paper introduces the principles of object-oriented translation for target machine which provides executing the sequences of elementary operations on persistent data presented as a set of relations (programmable relational system). The…

Databases · Computer Science 2013-04-09 Evgeniy Grigoriev

As the volume of publicly available data continues to grow, researchers face the challenge of limited diversity in benchmarking machine learning tasks. Although thousands of datasets are available in public repositories, the sheer abundance…

Information Retrieval · Computer Science 2025-02-25 Mara Graziani , Malina Molnar , Irina Espejo Morales , Joris Cadow-Gossweiler , Teodoro Laino

Creating datasets manually by human annotators is a laborious task that can lead to biased and inhomogeneous labels. We propose a flexible, semi-automatic framework for labeling data for relation extraction. Furthermore, we provide a…

Software Engineering · Computer Science 2021-09-07 Jeremias Bohn , Jannik Fischbach , Martin Schmitt , Hinrich Schütze , Andreas Vogelsang

Scientists often use observational time series data to study complex natural processes, but regression analyses often assume simplistic dynamics. Recent advances in deep learning have yielded startling improvements to the performance of…

Machine Learning · Computer Science 2023-04-21 Cory Shain , William Schuler

Principles of analogical reasoning have recently been applied in the context of machine learning, for example to develop new methods for classification and preference learning. In this paper, we argue that, while analogical reasoning is…

Machine Learning · Computer Science 2020-05-27 Eyke Hüllermeier

Linear mixed models (LMMs) are used extensively to model dependecies of observations in linear regression and are used extensively in many application areas. Parameter estimation for LMMs can be computationally prohibitive on big data.…

Machine Learning · Statistics 2019-03-08 Zilong Tan , Kimberly Roche , Xiang Zhou , Sayan Mukherjee

Multiscale modeling of complex systems is crucial for understanding their intricacies. Data-driven multiscale modeling has emerged as a promising approach to tackle challenges associated with complex systems. On the other hand,…

Machine Learning · Computer Science 2024-03-26 Ruyi Tao , Ningning Tao , Yi-zhuang You , Jiang Zhang

The performance of machine learning models relies heavily on the quality of input data, yet real-world applications often face significant data-related challenges. A common issue arises when curating training data or deploying models: two…

Machine Learning · Computer Science 2025-09-24 Varun Babbar , Zhicheng Guo , Cynthia Rudin

We consider algorithmic problems in the setting in which the input data has been partitioned arbitrarily on many servers. The goal is to compute a function of all the data, and the bottleneck is the communication used by the algorithm. We…

Data Structures and Algorithms · Computer Science 2014-07-01 Ravindran Kannan , Santosh Vempala , David Woodruff

The auto differentiable simulation is a type of simulation that outputs of the simulation include not only the simulation result itself, but also their derivatives with respect to various input parameters. It provides an efficient method to…

Computational Physics · Physics 2025-12-01 Ji Qianga , Yue Hao , Allen Qiang , Jinyu Wan

Hybrid continuous-discrete models naturally represent many real-world applications in robotics, finance, and environmental engineering. Inference with large-scale models is challenging because relational structures deteriorate rapidly…

Machine Learning · Computer Science 2012-10-19 Jaesik Choi , Eyal Amir

As datasets grow it becomes infeasible to process them completely with a desired model. For giant datasets, we frame the order in which computation is performed as a decision problem. The order is designed so that partial computations are…

Computation · Statistics 2014-03-18 Daniel John Lawson , Niall M Adams

We present a system for the automatic differentiation of a higher-order functional array-processing language. The core functional language underlying this system simultaneously supports both source-to-source automatic differentiation and…

Mathematical Software · Computer Science 2018-06-07 Amir Shaikhha , Andrew Fitzgibbon , Dimitrios Vytiniotis , Simon Peyton Jones , Christoph Koch

Linear algebraic expressions are the essence of many computationally intensive problems, including scientific simulations and machine learning applications. However, translating high-level formulations of these expressions to efficient…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-03-22 Dániel Berényi , András Leitereg , Gábor Lehel

Deep learning research aims at discovering learning algorithms that discover multiple levels of distributed representations, with higher levels representing more abstract concepts. Although the study of deep learning has already led to…

Machine Learning · Computer Science 2013-06-10 Yoshua Bengio

A key task in managing distributed, sensitive data is to measure the extent to which a distribution changes. Understanding this drift can effectively support a variety of federated learning and analytics tasks. However, in many practical…

Machine Learning · Computer Science 2024-12-02 Mary Scott , Sayan Biswas , Graham Cormode , Carsten Maple

As RDF becomes more widely established and the amount of linked data is rapidly increasing, the efficient querying of large amount of data becomes a significant challenge. In this paper, we propose a family of algorithms for querying large…

Databases · Computer Science 2022-09-13 Eleftherios Kalogeros , Manolis Gergatsoulis , Matthew Damigos , Christos Nomikos

Relational type systems have been designed for several applications including information flow, differential privacy, and cost analysis. In order to achieve the best results, these systems often use relational refinements and relational…

Programming Languages · Computer Science 2020-11-18 Ezgi Çiçek , Weihao Qu , Gilles Barthe , Marco Gaboardi , Deepak Garg