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Graph Neural Networks (GNNs) have been widely used in diverse brain network analysis tasks based on preprocessed functional magnetic resonance imaging (fMRI) data. However, their performances are constrained due to high feature sparsity and…

Machine Learning · Computer Science 2026-04-13 Rui Dong , Zitong Wang , Jiaxing Li , Weihuang Zheng , Youyong Kong

How to properly model graphs is a long-existing and important problem in NLP area, where several popular types of graphs are knowledge graphs, semantic graphs and dependency graphs. Comparing with other data structures, such as sequences…

Computation and Language · Computer Science 2019-07-16 Linfeng Song

Rule-based explanation methods offer rigorous and globally interpretable insights into neural network behavior. However, existing approaches are mostly limited to small fully connected networks and depend on costly layerwise rule extraction…

Machine Learning · Computer Science 2025-10-16 Chuqin Geng , Anqi Xing , Li Zhang , Ziyu Zhao , Yuhe Jiang , Xujie Si

Graph Transformer shows remarkable potential in brain network analysis due to its ability to model graph structures and complex node relationships. Most existing methods typically model the brain as a flat network, ignoring its modular…

Machine Learning · Computer Science 2025-11-25 Jiajun Ma , Yongchao Zhang , Chao Zhang , Zhao Lv , Shengbing Pei

We introduce Attention Graphs, a new tool for mechanistic interpretability of Graph Neural Networks (GNNs) and Graph Transformers based on the mathematical equivalence between message passing in GNNs and the self-attention mechanism in…

Machine Learning · Computer Science 2025-02-26 Batu El , Deepro Choudhury , Pietro Liò , Chaitanya K. Joshi

Graph learning aims to convert data into graph representations, which are fundamental to many problems in machine learning for CAD, where circuits, layouts, designs, and optimization states are often modeled as graph-structured objects.…

Machine Learning · Computer Science 2026-05-18 Yongyu Wang

Large language models (LLMs) have achieved great success in many fields, and recent works have studied exploring LLMs for graph discriminative tasks such as node classification. However, the abilities of LLMs for graph generation remain…

Machine Learning · Computer Science 2024-03-22 Yang Yao , Xin Wang , Zeyang Zhang , Yijian Qin , Ziwei Zhang , Xu Chu , Yuekui Yang , Wenwu Zhu , Hong Mei

Knowledge graphs (KGs) can be enhanced through rule mining; however, the resulting logical rules are often difficult for humans to interpret due to their inherent complexity and the idiosyncratic labeling conventions of individual KGs. This…

Computation and Language · Computer Science 2025-08-18 Nasim Shirvani-Mahdavi , Chengkai Li

Large-scale pre-trained language models (PLMs) have advanced Graph-to-Text (G2T) generation by processing the linearised version of a graph. However, the linearisation is known to ignore the structural information. Additionally, PLMs are…

Computation and Language · Computer Science 2022-10-20 Jiuzhou Han , Ehsan Shareghi

Large Language Models (LLMs) have demonstrated remarkable capabilities in modeling sequential textual data and generalizing across diverse tasks. However, adapting LLMs to effectively handle structural data, such as knowledge graphs or web…

Computation and Language · Computer Science 2025-11-12 Jiarui Feng , Donghong Cai , Yixin Chen , Muhan Zhang

Graphs are essential for modeling complex interactions across domains such as social networks, biology, and recommendation systems. Traditional Graph Neural Networks, particularly Message Passing Neural Networks (MPNNs), rely heavily on…

Machine Learning · Computer Science 2025-06-13 Wei Li , Mengcheng Lan , Jiaxing Xu , Yiping Ke

As large language models (LLMs) advance in their linguistic capacity, understanding how they capture aspects of language competence remains a significant challenge. This study therefore employs psycholinguistic paradigms in English, which…

Computation and Language · Computer Science 2024-12-12 Xufeng Duan , Xinyu Zhou , Bei Xiao , Zhenguang G. Cai

Deep neural networks have exhibited remarkable performance across a wide range of real-world tasks. However, comprehending the underlying reasons for their effectiveness remains a challenging problem. Interpreting deep neural networks…

Computer Vision and Pattern Recognition · Computer Science 2023-10-18 Chenxu Zhao , Wei Qian , Yucheng Shi , Mengdi Huai , Ninghao Liu

Benchmarking the capabilities and limitations of large language models (LLMs) in graph-related tasks is becoming an increasingly popular and crucial area of research. Recent studies have shown that LLMs exhibit a preliminary ability to…

Machine Learning · Computer Science 2025-04-22 Xinnan Dai , Haohao Qu , Yifen Shen , Bohang Zhang , Qihao Wen , Wenqi Fan , Dongsheng Li , Jiliang Tang , Caihua Shan

Emotion recognition from electroencephalography (EEG) signals remains challenging due to high inter-subject variability, limited labeled data, and the lack of interpretable reasoning in existing approaches. While recent multimodal large…

Machine Learning · Computer Science 2026-01-14 Fei Ma , Han Lin , Yifan Xie , Hongwei Ren , Xiaoyu Shen , Wenbo Ding , Qi Tian

Code language models excel on code intelligence tasks, yet their internal interpretability is underexplored. Existing neuron interpretability techniques from NLP are suboptimal for source code due to programming languages formal,…

Software Engineering · Computer Science 2026-03-20 Zhe Yin , Xiaodong Gu , Beijun Shen

Evaluating the graph comprehension and reasoning abilities of Large Language Models (LLMs) is challenging and often incomplete. Existing benchmarks focus primarily on pure graph understanding, lacking a comprehensive evaluation across all…

Artificial Intelligence · Computer Science 2025-02-27 Zike Yuan , Ming Liu , Hui Wang , Bing Qin

Interpretable graph neural networks (XGNNs ) are widely adopted in various scientific applications involving graph-structured data. Existing XGNNs predominantly adopt the attention-based mechanism to learn edge or node importance for…

Machine Learning · Computer Science 2024-06-13 Yongqiang Chen , Yatao Bian , Bo Han , James Cheng

Graph learning has attracted significant attention due to its widespread real-world applications. Current mainstream approaches rely on text node features and obtain initial node embeddings through shallow embedding learning using GNNs,…

Artificial Intelligence · Computer Science 2025-02-13 Chuanqi Shi , Yiyi Tao , Hang Zhang , Lun Wang , Shaoshuai Du , Yixian Shen , Yanxin Shen

Interpreting complex neural networks is crucial for understanding their decision-making processes, particularly in applications where transparency and accountability are essential. This proposed method addresses this need by focusing on…

Neural and Evolutionary Computing · Computer Science 2024-12-10 Deepshikha Bhati , Fnu Neha , Md Amiruzzaman , Angela Guercio , Deepak Kumar Shukla , Ben Ward
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